View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_16 (Length: 470)
Name: NF19913_high_16
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 37 - 454
Target Start/End: Original strand, 36075142 - 36075550
Alignment:
| Q |
37 |
tcaacaacatcaaaaacaacacaagcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccacgtaatccaaaa |
136 |
Q |
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| T |
36075142 |
tcaacaacatcaaaaacaactcaagcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccaagtaatccaaaa |
36075241 |
T |
|
| Q |
137 |
taatctccattctttatatt----gttgcgcatgcatcctcaagaaaactatgagcaccaccaccttcggtactcataatggacttttgccttgggatca |
232 |
Q |
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| T |
36075242 |
taatctccattctttatattaattgttgcgcat----cctcaagaaaactatgagcaccaccac---------tcataatggacttttgccttgggatca |
36075328 |
T |
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| Q |
233 |
ccaccactttgattaattgtgttggtcaactcaatatttggattacgtggttccttatgtccaccccaatgagtgtatgttgaagttttatgatatttct |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075329 |
ccaccactttgattaattgtgttggtcaactcaatatttggattacgtggttccttatgtccaccccaatgagtgtatgttgaagttttatgatatttct |
36075428 |
T |
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| Q |
333 |
aaaattggtcgttagaactatgacaaattatatagtgagctagaaacaaacattatagataaaattagaagttttgttctagatgttgatattgatgata |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
36075429 |
aaaattggtcgttagaactatgacaaattatatagtgagctagaaacaaacattatagataaaattagaagtgttgttctagatgttgattttgatgata |
36075528 |
T |
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| Q |
433 |
ccatgatatggagcatggaatg |
454 |
Q |
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| T |
36075529 |
ccatgatatggagcatggaatg |
36075550 |
T |
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