View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_18 (Length: 463)
Name: NF19913_high_18
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 20526890 - 20527319
Alignment:
| Q |
19 |
catgacatccaagcacaaacaaacgagttcagttttgagtaataagagttgcaacttgcaagcttgaaattataaagcatgctaactgaaataatcacaa |
118 |
Q |
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| T |
20526890 |
catgacatccaagcacaaacaaaagagttcagttttgagtaataagagttgcaacttgcaagcttgaaattataaagcatgctaactgaaataatcacaa |
20526989 |
T |
|
| Q |
119 |
caatatgctcactgtaaaagagtagagtgtatatgcgctcgaaatagccaaatgctaagttgcaacaaattttcaaaatggtcaaggaaaacaagttaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20526990 |
caatatgctcactgtaaaagagtagagtgtatatgcgctcgaaatagccaaatgctaagttgcaacaaattttcaaaatggtcaagggaaacaagttaaa |
20527089 |
T |
|
| Q |
219 |
aagaacaaatgagtccttcgaatatgtagcaaaaaagattattacacatttcactaaaaaagtggcactcacctcgggttagtattaaatacaccctctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||| |||||| ||||||| |
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| T |
20527090 |
aagaacaaatgagtccttcgaatatgtagcaaaaaagattattacacatttcactaaaaaagtgtcactcacctttgattattatcaaatactccctctt |
20527189 |
T |
|
| Q |
319 |
tgcatttttataagcactcattgacattttccggctttgttttgtcttgtgattcatgatgcaattgacagaaatttactcaagcaaaggatgattgcaa |
418 |
Q |
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|||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| || |
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| T |
20527190 |
tgcatttttataagcactcattaaatttttccctctttgttttggcttgtgattcatgatgcaattgtcagaaatttactgaagcaaaggatgattggaa |
20527289 |
T |
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| Q |
419 |
agcaacaatgcacaatctgatggtaaatag |
448 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
20527290 |
agcaacaatgtacaatctgatggtaaatag |
20527319 |
T |
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