View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_19 (Length: 459)
Name: NF19913_high_19
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 47826457 - 47826034
Alignment:
| Q |
1 |
cgacctcagcatttgccatagcaactcgcattgtttcagtcggttttgtgactgtatctgaccgaagatccactgtcctagttaccattttttctgcaac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47826457 |
cgacctcagcgtttgccatagcaactcgcattgtttcagtcggttttgtgactgtatctgaccgaagatccactgtcctagttaccattttttctgcaac |
47826358 |
T |
|
| Q |
101 |
taaaacaaaattcaaaatgtaagtctcataactcactcctattctcccaaatttaactcgaaccgattaaatcaatttagcaattatatacaaattcatg |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47826357 |
taaagcaaaattcaaaatgtaagtctcataactcactcctattctcccaaatttaactcgaaccgattaaatcaatttagcaattatatacaaattcatg |
47826258 |
T |
|
| Q |
201 |
attccataactttaaattctattcaggtcttatctctacgcttcgagcgtggataacacagaataacaaatttataatagactatgatacatcatggatc |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47826257 |
attccataacttcaaattctattcaggtcttatctctacgcttcgagcgtggataacgcagaataacaaatttataatagactatgatacatcatggatc |
47826158 |
T |
|
| Q |
301 |
tttcatataattttataccatagttcttagcttatgaaaatgaaacacagcatcatatgtctgagttactattgagcacatgcacagaatctgttgagaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47826157 |
tttcatataattttataccatagttcttagcttatgaaaatgaaacacagc-------------------attgagcacatgcacagaatctgttgagaa |
47826077 |
T |
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| Q |
401 |
acatgataaactccaacaaagagaaaaatgaattgaaagaaaa |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47826076 |
acatgataaactccaacaaagagaaaaatgaattgaaagaaaa |
47826034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 35630753 - 35630856
Alignment:
| Q |
6 |
tcagcatttgccatagcaactcgcattgtttcagtcggttttgtgactgtatctgaccgaagatccactgtcctagttaccattttttctgcaactaaaa |
105 |
Q |
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|||||| ||||||||||| | | ||||| ||||| || ||||| || || ||||||||||||||||| | |||||||||||||| ||| |||||| || |
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| T |
35630753 |
tcagcacttgccatagcagccctcattgcctcagttggctttgtcaccgtgtctgaccgaagatccacatttctagttaccattttctctacaactacaa |
35630852 |
T |
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| Q |
106 |
caaa |
109 |
Q |
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|||| |
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| T |
35630853 |
caaa |
35630856 |
T |
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