View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_24 (Length: 440)
Name: NF19913_high_24
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 12196803 - 12197236
Alignment:
| Q |
1 |
ttagaagaattggtttgtgtaaaatatgaaccctgatttattcaatgagggaatttccctacatgtattttgtcaata-----------acattgttaat |
89 |
Q |
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| T |
12196803 |
ttagaagaattggtttgtgtaaaatatgaactctgatttattcaatgagggaatttccctacatgtattttgtcaatacaacaataacaacattgttaat |
12196902 |
T |
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| Q |
90 |
acaacaattaatatctaagaagaacgaatcaaataaagtttttctttatatttcttggtaaacacttgagcaatgaagattaaattttaaataaattaaa |
189 |
Q |
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| T |
12196903 |
acaacaattaacatttaagatgaacgaatcaaataaaaaatttctttatatttcttggtaaacacttgagcaatgaagattaaattttaaataaattaaa |
12197002 |
T |
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| Q |
190 |
agttgccttactttgatttgaatttgtgctagacttattgtagtggttggacttggaagaatttatcaagtatttgtttgatgaattatcacccaagtat |
289 |
Q |
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| T |
12197003 |
agttgccttactttgatttgaatttgtgctggacttattgtagtggttggacttggaagaatttatcaagtatttgtttgatgaattatcacccaagtat |
12197102 |
T |
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| Q |
290 |
gctgccgaggtgaatggaaatccaactaatagctcttgaagaaaataagccatcctctatcaaataattttcttctcaatcttgattgatttgcttagct |
389 |
Q |
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| T |
12197103 |
gctgctgagttgaatggaaatccaactaatagctcttgaagaaaataagccatcctctatcaaataattttcttctcaatcttgatttatttgcttagct |
12197202 |
T |
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| Q |
390 |
tgatgaaacttcatgattttaagggtgtctatat |
423 |
Q |
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| T |
12197203 |
tgatgaaacttcatgattttaagggtgtctatat |
12197236 |
T |
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