View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_high_33 (Length: 410)

Name: NF19913_high_33
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_high_33
NF19913_high_33
[»] chr8 (8 HSPs)
chr8 (79-238)||(33990902-33991061)
chr8 (83-238)||(33973991-33974142)
chr8 (229-410)||(33991120-33991298)
chr8 (229-410)||(33951600-33951778)
chr8 (229-410)||(33974201-33974379)
chr8 (83-209)||(33951396-33951518)
chr8 (306-410)||(33941127-33941231)
chr8 (306-410)||(33912388-33912492)
[»] scaffold0391 (1 HSPs)
scaffold0391 (278-410)||(11305-11436)
[»] chr7 (2 HSPs)
chr7 (276-410)||(8278627-8278765)
chr7 (359-401)||(2764119-2764161)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 33990902 - 33991061
Alignment:
Q  79 cttgtgtgtagagcagcttaaagcggtattcatgctggctgattgtagatagttagtttgtccttagagaatattatgtttaggagcagttcattatttt 178  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33990902 cttgtgtgtagagcagcttaaagcggtattcatgctcgctgattgtagatagttagtttgtccttagagaatattatgtttaggagccgttcattatttt 33991001  T
Q  179 ccaaattacatcataggaaaacattgtaggcatcttctattctctgcaaatgttcattta 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33991002 ccaaattacatcataggaaaacattgtaggcatcttctattctctgcaaatgttgattta 33991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 33973991 - 33974142
Alignment:
Q  83 tgtgtagagcagcttaaagcggtattcatgctggctgattgtagatagttagtttgtccttagagaatattatgtttaggagcagttcattattttccaa 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33973991 tgtgtagagcagcttaaagcggtattcatgctcgctgattgtagatagt----ttgtccttagagaatattatgtttaggagcagttcattattttccaa 33974086  T
Q  183 attacatcataggaaaacattgtaggcatcttctattctctgcaaatgttcattta 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  33974087 attacatcataggaaaacattgtaggcatcttctatcctctgcaaatgttgattta 33974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 229 - 410
Target Start/End: Original strand, 33991120 - 33991298
Alignment:
Q  229 tgttcatttagttgagcatgttaaattaatgtaaaagacatcaac-ccttttgtcttacaatctgtctttgttttcactaggtaaattcaaggaaaacat 327  Q
    |||||||||||||||||||||||    ||||||||||| || |||   ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  33991120 tgttcatttagttgagcatgtta----aatgtaaaagagattaactatttttgtcttacaatctgtctttggttttactaggtaaattcaaggaaaacat 33991215  T
Q  328 tatatttgtcaccttctcaaaaatccccattttgaagactattgtagagagaataattgaacattgtggatatccagtgcctg 410  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33991216 tatatttgtcaccttctcaaaaacacccatgttgaagactattgtagagagaataattgaacattgcggatatccagtgcctg 33991298  T

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Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 410
Target Start/End: Original strand, 33951600 - 33951778
Alignment:
Q  229 tgttcatttagttgagcatgttaaattaatgtaaaagacatcaacc-cttttgtcttacaatctgtctttgttttcactaggtaaattcaaggaaaacat 327  Q
    ||||||||||||||||||||||||||    ||||||||||| |||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  33951600 tgttcatttagttgagcatgttaaat----gtaaaagacattaacttcttttgtcttacaatctgtctttggttttactaggtaaattcaaggaaaacat 33951695  T
Q  328 tatatttgtcaccttctcaaaaatccccattttgaagactattgtagagagaataattgaacattgtggatatccagtgcctg 410  Q
    |||||||||||||||||||||||  |||||  |||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  33951696 tatatttgtcaccttctcaaaaacacccatgctgaagactattgtagagagaatacatcaacattgtggatatccagtgcctg 33951778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 229 - 410
Target Start/End: Original strand, 33974201 - 33974379
Alignment:
Q  229 tgttcatttagttgagcatgttaaattaatgtaaaagacatcaaccctttt-gtcttacaatctgtctttgttttcactaggtaaattcaaggaaaacat 327  Q
    ||||||||||||||||||| ||||||    ||||||||||| |||  |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  33974201 tgttcatttagttgagcatattaaat----gtaaaagacattaactttttttgtcttacaatctgtctttggttttactaggtaaattcaaggaaaacat 33974296  T
Q  328 tatatttgtcaccttctcaaaaatccccattttgaagactattgtagagagaataattgaacattgtggatatccagtgcctg 410  Q
    |||||||||||||||||||||||  |||||  |||||||||||||||||||||||  | |||||||||||||| |||||||||    
T  33974297 tatatttgtcaccttctcaaaaacacccatgctgaagactattgtagagagaatacatcaacattgtggatattcagtgcctg 33974379  T

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Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 33951396 - 33951518
Alignment:
Q  83 tgtgtagagcagcttaaagcggtattcatgctggctgattgtagatagttagtttgtccttagagaatattatgtttaggagcagttcattattttccaa 182  Q
    |||||||||||||||||||| |||||||| ||   |||||| |||    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33951396 tgtgtagagcagcttaaagctgtattcattctcattgattgcaga----tagtttgtccttagagaatattatgtttaggagcggttcattattttccaa 33951491  T
Q  183 attacatcataggaaaacattgtaggc 209  Q
    |||||||||||||||||||||||||||    
T  33951492 attacatcataggaaaacattgtaggc 33951518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 33941127 - 33941231
Alignment:
Q  306 taggtaaattcaaggaaaacattatatttgtcaccttctcaaaaatccccattttgaagactattgtagagagaataattgaacattgtggatatccagt 405  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  |||||  |||||| ||||||||||||| || |||||||||| |||||||| ||    
T  33941127 taggtaaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgctgaagattattgtagagagattatttgaacattgcggatatccggt 33941226  T
Q  406 gcctg 410  Q
    |||||    
T  33941227 gcctg 33941231  T

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Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 33912388 - 33912492
Alignment:
Q  306 taggtaaattcaaggaaaacattatatttgtcaccttctcaaaaatccccattttgaagactattgtagagagaataattgaacattgtggatatccagt 405  Q
    |||| |||||||||||||||||||||||||| |||||||||||||  ||||| ||||||| ||| ||| ||||| || |||||||| |||||||||| ||    
T  33912388 taggcaaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattatggtacagagactatttgaacatggtggatatccggt 33912487  T
Q  406 gcctg 410  Q
    |||||    
T  33912488 gcctg 33912492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 278 - 410
Target Start/End: Original strand, 11305 - 11436
Alignment:
Q  278 ttgtcttacaatctgtc-tttgttttcactaggtaaattcaaggaaaacattatatttgtcaccttctcaaaaatccccattttgaagactattgtagag 376  Q
    |||||||||||| |||| |||||||| || ||| |||||||||||||| ||||||||||||||||| || ||||  ||||| ||||||||||||||||||    
T  11305 ttgtcttacaat-tgtcctttgttttaac-aggaaaattcaaggaaaatattatatttgtcaccttatcgaaaacacccatgttgaagactattgtagag 11402  T
Q  377 agaataattgaacattgtggatatccagtgcctg 410  Q
    ||| || ||||||||||||||||||||| |||||    
T  11403 agactatttgaacattgtggatatccagggcctg 11436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 276 - 410
Target Start/End: Complemental strand, 8278765 - 8278627
Alignment:
Q  276 ttttgtcttacaatctgtctttgttttcactaggtaaattcaaggaaaacattat---atttgtcaccttctcaaaaatccccattttgaagactattgt 372  Q
    |||||||| |||| ||||||||| ||| ||||||||||| || ||||||||||||   ||||||||||||||||||||| ||||  ||||||||||||||    
T  8278765 ttttgtctgacaaactgtctttggttttactaggtaaatccatggaaaacattattatatttgtcaccttctcaaaaatgcccacgttgaagactattgt 8278666  T
Q  373 agagagaata-attgaacattgtggatatccagtgcctg 410  Q
    |||||  |||   |||||| |||||||||||||||||||    
T  8278665 agagaagatatgatgaacactgtggatatccagtgcctg 8278627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 2764119 - 2764161
Alignment:
Q  359 ttgaagactattgtagagagaataattgaacattgtggatatc 401  Q
    ||||||| ||||||||||||| || ||||||||||||||||||    
T  2764119 ttgaagattattgtagagagactatttgaacattgtggatatc 2764161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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