View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_high_34 (Length: 397)

Name: NF19913_high_34
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_high_34
NF19913_high_34
[»] chr3 (4 HSPs)
chr3 (11-381)||(44826004-44826373)
chr3 (19-175)||(44582067-44582222)
chr3 (63-175)||(53517361-53517473)
chr3 (63-175)||(33886956-33887068)
[»] chr4 (3 HSPs)
chr4 (42-173)||(7182398-7182528)
chr4 (63-175)||(47803492-47803605)
chr4 (11-47)||(7181970-7182006)
[»] chr7 (3 HSPs)
chr7 (11-175)||(34827885-34828037)
chr7 (19-175)||(8292209-8292364)
chr7 (67-168)||(9940062-9940163)
[»] chr2 (1 HSPs)
chr2 (19-175)||(21871478-21871633)
[»] chr8 (1 HSPs)
chr8 (63-175)||(28798027-28798139)
[»] chr1 (1 HSPs)
chr1 (137-180)||(12004671-12004714)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 44826373 - 44826004
Alignment:
Q  11 gagagaagaataattggataagtgcaaaatccctaagtgaaacaacaagctagtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44826373 gagagaagaataattggataagtgcaaaatccctaagtgaaacaacaagctagtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagata 44826274  T
Q  111 gttggttgaaattttacaatcccagggggtgcaggtgcacaccctcactaagaggtggctccgcctctgaccatcatggccgtcccactaccagcaacat 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44826273 gttggttgaaattttacaatcccagggg-tgcaggtgcacaccctcactaagaggtggccccgcctctgaccatcatggccgtcccactaccagcaacat 44826175  T
Q  211 tcagccttcttctggcagcctatagtaacaataaactacatgttcagcattctctcaatctcattatctttctatcaaagaagaatttaaaaaagtgttt 310  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44826174 tcagccttcttctggcagcctatagtaaaaataaactacatgttcagcattctctcaatctcattatctttctatcaaagaagaatttaaaaaagtgttt 44826075  T
Q  311 acttgaaaatgggtcatttttagaagtgagttttccggttacgattgacgacgttaagacatagaaggaag 381  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44826074 acttgaaaatgggtcattttcagaagtgagttttccggtcacgattgacgacgttaagacatagaaggaag 44826004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 44582222 - 44582067
Alignment:
Q  19 aataattggataagtgcaaaatccctaagtgaaacaacaagctagtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttg 118  Q
    |||| |||||||||||||||||  |||||||||||  || ||| ||||||||| ||||| ||||| ||||||  ||| |||||||| ||||| ||||  |    
T  44582222 aatatttggataagtgcaaaatagctaagtgaaactgca-gctggtgcaaaattaatttccgagggtgtgcaggtgcgaataaactaagataattggaag 44582124  T
Q  119 aaattttacaatcccagggggtgcaggtgcacaccctcactaagaggtggctccgcc 175  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  44582123 aaattttacaatctcagggggtgcaggtacacaccctcactaagaggtggctccgcc 44582067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 53517473 - 53517361
Alignment:
Q  63 gtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttgaaattttacaatcccagggggtgcaggtgcacaccctcactaag 162  Q
    ||||||||||||| || |||| |||||| || ||||||||   ||||| |||||||||| |||| |||  |||||| |||||||||||||||||||||||    
T  53517473 gtgcaaaataaatatttgagggtgtgcagatacaaataaaacaagatatttggttgaaaatttaaaatttcaggggatgcaggtgcacaccctcactaag 53517374  T
Q  163 aggtggctccgcc 175  Q
    |||||||||||||    
T  53517373 aggtggctccgcc 53517361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 33886956 - 33887068
Alignment:
Q  63 gtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttgaaattttacaatcccagggggtgcaggtgcacaccctcactaag 162  Q
    ||||||||||||| || |||| |||||| | ||||| |||   ||||| |||||||||||||||  ||  |||||||||||||||||||||||||||| |    
T  33886956 gtgcaaaataaatatttgagggtgtgcagaagcaaaaaaataaagataattggttgaaattttaacatttcagggggtgcaggtgcacaccctcactatg 33887055  T
Q  163 aggtggctccgcc 175  Q
    |||||||||||||    
T  33887056 aggtggctccgcc 33887068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 173
Target Start/End: Original strand, 7182398 - 7182528
Alignment:
Q  42 cctaagtgaaacaacaagctagtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttgaaattttacaatcccagggggtg 141  Q
    |||||||||||||||| | | ||||||||||||||| | ||| |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  7182398 cctaagtgaaacaacatg-tggtgcaaaataaatttcccagggtgtgcaaatgcaaataaacttatatagttggttgaaattttacaatcacagggggtg 7182496  T
Q  142 caggtgcacaccctcactaagaggtggctccg 173  Q
    ||||||||||||||||||||||||||||||||    
T  7182497 caggtgcacaccctcactaagaggtggctccg 7182528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 47803492 - 47803605
Alignment:
Q  63 gtgcaaaataaattttcgaggctgtgcaaatgcaaataaa-ctgagatagttggttgaaattttacaatcccagggggtgcaggtgcacaccctcactaa 161  Q
    ||||||||||||| || |||| |||||| || |||||||| |  ||||| |||||||||| |||| |||  || ||| |||||||||||| |||||||||    
T  47803492 gtgcaaaataaatatttgagggtgtgcagatacaaataaaacaaagatatttggttgaaaatttaaaatttcaagggatgcaggtgcacagcctcactaa 47803591  T
Q  162 gaggtggctccgcc 175  Q
    ||||||||||||||    
T  47803592 gaggtggctccgcc 47803605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 7181970 - 7182006
Alignment:
Q  11 gagagaagaataattggataagtgcaaaatccctaag 47  Q
    ||||||||||||||||||||| |||||||||||||||    
T  7181970 gagagaagaataattggataactgcaaaatccctaag 7182006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 34827885 - 34828037
Alignment:
Q  11 gagagaagaataattggataagtgcaaaatccctaa-gtgaaacaacaagctagtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagat 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||            ||| ||||||||||||||||||||    
T  34827885 gagagaagaataattggataagtgcaaaatccctaaagtgaaacaacatgctggtgcaaaataa------------gtgtaaatgcaaataaactgagat 34827972  T
Q  110 agttggttgaaattttacaatcccagggggtgcaggtgcacaccctcactaagaggtggctccgcc 175  Q
     ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  34827973 tgttggttgaaattttacaatccca-tgggtgcaggtgcacaccctcactaagaggtggctccgcc 34828037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 8292209 - 8292364
Alignment:
Q  19 aataattggataagtgcaaaatccctaagtgaaacaacaagctagtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttg 118  Q
    |||| |||||||||||||||||  |||||||||||  ||| || ||||||||| ||||| | ||| ||||||  ||| |||||||| ||||| ||||  |    
T  8292209 aatatttggataagtgcaaaatagctaagtgaaactgcaa-ctggtgcaaaattaatttcccagggtgtgcaggtgcgaataaactaagataattggaag 8292307  T
Q  119 aaattttacaatcccagggggtgcaggtgcacaccctcactaagaggtggctccgcc 175  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8292308 aaattttacaatctcagggggtgcaggtgcacaccctcactaagaggtggctccgcc 8292364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 9940163 - 9940062
Alignment:
Q  67 aaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttgaaattttacaatcccagggggtgcaggtgcacaccctcactaagaggt 166  Q
    ||||||||| || |||| |||| | || |||||||| | || || ||| ||||||||||| |||  ||||| |||||| ||||||||||||||| |||||    
T  9940163 aaaataaatgtttgaggatgtgtagatacaaataaattaagctaattgattgaaattttaaaatttcagggtgtgcagttgcacaccctcactatgaggt 9940064  T
Q  167 gg 168  Q
    ||    
T  9940063 gg 9940062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 21871478 - 21871633
Alignment:
Q  19 aataattggataagtgcaaaatccctaagtgaaacaacaagctagtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttg 118  Q
    |||| |||||||||||||||||  |||||||||||  || ||| ||||||||| ||||| | ||| ||||||  ||| |||||||| ||||| ||||  |    
T  21871478 aatatttggataagtgcaaaatagctaagtgaaactgca-gctggtgcaaaattaatttcccagggtgtgcaggtgcgaataaactaagataattggaag 21871576  T
Q  119 aaattttacaatcccagggggtgcaggtgcacaccctcactaagaggtggctccgcc 175  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21871577 aaattttacaatctcagggggtgcaggtgcacaccctcactaagaggtggctccgcc 21871633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 28798139 - 28798027
Alignment:
Q  63 gtgcaaaataaattttcgaggctgtgcaaatgcaaataaactgagatagttggttgaaattttacaatcccagggggtgcaggtgcacaccctcactaag 162  Q
    ||||||||||||| || |||| |||||| || |||||||| | ||||| |||||||||| |||| |||  || ||| |||||||||||| ||||||||||    
T  28798139 gtgcaaaataaatatttgagggtgtgcagatacaaataaaataagatatttggttgaaaatttaaaatttcaagggatgcaggtgcacagcctcactaag 28798040  T
Q  163 aggtggctccgcc 175  Q
    |||||||||||||    
T  28798039 aggtggctccgcc 28798027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 12004671 - 12004714
Alignment:
Q  137 gggtgcaggtgcacaccctcactaagaggtggctccgcctctga 180  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  12004671 gggtgcaagtgcacaccctcactaagaggtggctccgcccctga 12004714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University