View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_44 (Length: 356)
Name: NF19913_high_44
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 33580832 - 33580691
Alignment:
| Q |
158 |
ccctttcttctttccttcccttaatcttaactcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcacgcatgttgcatgt |
257 |
Q |
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| T |
33580832 |
ccctttcttctttccttcccttattcttaactcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcactcatgttgcatgt |
33580733 |
T |
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| Q |
258 |
gtgcaatgctctagtttgctaaaataaatggtactccaatta |
299 |
Q |
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| T |
33580732 |
gtgcaatgctctagtttgctaaaataaatggtactccaatta |
33580691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 332
Target Start/End: Complemental strand, 32356106 - 32355958
Alignment:
| Q |
189 |
tcatcactttcatcttttatacctgcttctattatgacaattttacttcttttcacgcatg-----ttgcatgtgtgcaatgctctagtttgctaaaata |
283 |
Q |
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| T |
32356106 |
tcatcactttcatcttttataccagcttctattatgacaattttactacttttcacacatgttgcattgcatgtgtgcaatgctctagtttgctaaaata |
32356007 |
T |
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| Q |
284 |
aatggtactccaattatgtcgagagtttgctataatattaccatctgac |
332 |
Q |
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| T |
32356006 |
aagggtactccagttgtgcttttagtttgctataataatgccatctgac |
32355958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33580990 - 33580930
Alignment:
| Q |
1 |
tttgcatctgattcattagttcacttaattcttacaattaattggtagaaccttctggaag |
61 |
Q |
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| T |
33580990 |
tttgcatccgattcattagttcacttaattcttacaactaattggtagaaccttctggaag |
33580930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32356298 - 32356238
Alignment:
| Q |
1 |
tttgcatctgattcattagttcacttaattcttacaattaattggtagaaccttctggaag |
61 |
Q |
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| T |
32356298 |
tttgcatccgattcattagtttacttaattcttacaactaatacgtagaaccttctggaag |
32356238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 17969315 - 17969247
Alignment:
| Q |
168 |
tttccttcccttaatcttaactcatcactttcatcttttatacctgcttctattatgacaattttactt |
236 |
Q |
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||||||| |||| |||| |||| ||||||||||||||||||| | ||||||||| ||||||| ||||| |
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| T |
17969315 |
tttccttatcttattctttactcgtcactttcatcttttatacgttcttctattacgacaattctactt |
17969247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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