View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_5 (Length: 576)
Name: NF19913_high_5
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 14 - 561
Target Start/End: Complemental strand, 41063274 - 41062727
Alignment:
| Q |
14 |
agagaagagtgatgtgtacagctatggtgttgtgctccttgagatgttaactggaatggaaccaactgataacaggattccagagggtgctcacattgta |
113 |
Q |
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| T |
41063274 |
agagaagagtgatgtgtacagctatggtgttgtgctccttgagatgttaactggaatggaaccaactgataacaggattccagagggtgctcacattgta |
41063175 |
T |
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| Q |
114 |
acatgggttatcagcgaaatcagagagaagaaaaaagaattcacatctattattgatcagcaattattattacagtgtggaacaaaaacaccagagatgc |
213 |
Q |
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| T |
41063174 |
acatgggttatcagcgaaatcagagagaagaaaaaagaattcacatctattattgatcagcaattattattacagtgtggaacaaaaacaccagagatgc |
41063075 |
T |
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| Q |
214 |
ttcaagtgctaggtgtagctcttctctgtgtgaatccatcaccagaagaaagacctacgatgaaagatgtaacagcaatgctcaaagagattaggcatga |
313 |
Q |
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| T |
41063074 |
ttcaagtgctaggtgtagctcttctctgtgtgaatccatcaccagaagaaagacctacgatgaaagatgtaacagcaatgctcaaagagattaggcatga |
41062975 |
T |
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| Q |
314 |
aaatgatgatttggataaaccaaataaaggcatggttattaccaatccaaaagcagcagttcattgttccagtttctcaagatcatgtgaacttttgata |
413 |
Q |
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| T |
41062974 |
aaatgatgatttggataaaccaaataaaggcatggttattaccaatccaaaagcagcagttcattgttccagtttctcaagatcatgtgaacttttgata |
41062875 |
T |
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| Q |
414 |
gaatcatcatcatcttcatagtcaacatattgattattaaacctcttaatttcttaagtaacaaattatttatttgtatagattatagtattatatatct |
513 |
Q |
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| T |
41062874 |
gaatcatcatcatcttcatagtcaacatattgattattaaacctcttaatttcttaagtaacaaattatttatttgtatagattatagtattatatatct |
41062775 |
T |
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| Q |
514 |
tatggcaattccatattacaattgtgttatttgtgtagataaaatcct |
561 |
Q |
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| T |
41062774 |
tatggcaattccatattacaattgtgttatttgtgtagataaaatcct |
41062727 |
T |
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