View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_high_53 (Length: 308)

Name: NF19913_high_53
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_high_53
NF19913_high_53
[»] chr6 (8 HSPs)
chr6 (138-298)||(21424392-21424549)
chr6 (50-107)||(21424643-21424700)
chr6 (47-103)||(21419308-21419364)
chr6 (50-107)||(10026140-10026197)
chr6 (47-107)||(10027124-10027184)
chr6 (45-107)||(33595608-33595670)
chr6 (51-111)||(3218152-3218212)
chr6 (39-107)||(3922827-3922895)
[»] chr8 (12 HSPs)
chr8 (140-298)||(14161242-14161397)
chr8 (47-107)||(14161495-14161555)
chr8 (49-103)||(14156163-14156217)
chr8 (42-111)||(20178363-20178432)
chr8 (42-111)||(20223091-20223160)
chr8 (44-107)||(14577154-14577217)
chr8 (46-108)||(30928309-30928371)
chr8 (45-107)||(35482990-35483052)
chr8 (52-109)||(17844167-17844224)
chr8 (50-107)||(30928601-30928658)
chr8 (47-107)||(27912386-27912446)
chr8 (47-107)||(27958805-27958865)
[»] chr7 (13 HSPs)
chr7 (140-298)||(29706626-29706781)
chr7 (48-107)||(29706877-29706936)
chr7 (49-103)||(29701543-29701597)
chr7 (1-49)||(49010372-49010420)
chr7 (217-268)||(41172215-41172266)
chr7 (49-111)||(31894257-31894319)
chr7 (42-111)||(44307603-44307672)
chr7 (49-111)||(31894539-31894601)
chr7 (50-111)||(1511190-1511251)
chr7 (44-107)||(1511475-1511538)
chr7 (48-107)||(10878623-10878682)
chr7 (45-107)||(28408529-28408591)
chr7 (1-49)||(8722827-8722875)
[»] chr4 (9 HSPs)
chr4 (44-107)||(21360451-21360514)
chr4 (44-111)||(30055488-30055555)
chr4 (51-107)||(30799612-30799668)
chr4 (44-107)||(37872761-37872824)
chr4 (44-111)||(46143555-46143622)
chr4 (45-107)||(13294891-13294953)
chr4 (49-107)||(25297679-25297737)
chr4 (50-110)||(30055208-30055268)
chr4 (47-111)||(42856801-42856865)
[»] chr3 (9 HSPs)
chr3 (48-107)||(52091714-52091773)
chr3 (49-107)||(52090881-52090939)
chr3 (46-111)||(3612591-3612656)
chr3 (44-107)||(5048383-5048446)
chr3 (45-108)||(44506331-44506394)
chr3 (49-111)||(17574372-17574434)
chr3 (45-111)||(22975629-22975695)
chr3 (47-107)||(8851801-8851861)
chr3 (43-107)||(28830041-28830105)
[»] chr2 (5 HSPs)
chr2 (48-107)||(8322471-8322530)
chr2 (44-107)||(27360410-27360473)
chr2 (47-107)||(30337717-30337777)
chr2 (49-107)||(17846007-17846065)
chr2 (50-107)||(30337424-30337481)
[»] chr1 (7 HSPs)
chr1 (217-270)||(19832206-19832259)
chr1 (47-107)||(12115240-12115300)
chr1 (48-111)||(7113863-7113926)
chr1 (44-107)||(19897170-19897233)
chr1 (49-104)||(40290073-40290128)
chr1 (45-107)||(17611713-17611775)
chr1 (45-111)||(25780173-25780239)
[»] chr5 (7 HSPs)
chr5 (39-107)||(35362206-35362274)
chr5 (50-107)||(27843023-27843080)
chr5 (48-107)||(15179078-15179137)
chr5 (48-107)||(32994443-32994502)
chr5 (49-107)||(32458075-32458133)
chr5 (45-107)||(35363278-35363340)
chr5 (50-107)||(19558161-19558218)
[»] scaffold0311 (1 HSPs)
scaffold0311 (47-107)||(12885-12945)
[»] scaffold0029 (1 HSPs)
scaffold0029 (47-107)||(136913-136973)
[»] scaffold0002 (1 HSPs)
scaffold0002 (47-107)||(330194-330254)
[»] scaffold0347 (2 HSPs)
scaffold0347 (50-111)||(11940-12001)
scaffold0347 (49-106)||(12223-12280)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 138 - 298
Target Start/End: Complemental strand, 21424549 - 21424392
Alignment:
Q  138 atttaactttatgttcatcttctccaatgttcacacaagcttcttcttctcagtcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattc 237  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||    
T  21424549 atttaacgttatgttcatcttctccaatgttcacacaagcttcttct---caatcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattc 21424453  T
Q  238 atggcatcctcacgcacacaaggttcacacacacaatcatttttcggttccttcatctctg 298  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  21424452 atggcatccttacgcacacaaggttcacacacacaatcatttttcggttctttcatttctg 21424392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 21424700 - 21424643
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21424700 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 21424643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 21419308 - 21419364
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcct 103  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  21419308 ttaggcaaaattacacaaatggtcctataacttatttttaggtaacgttttcgtcct 21419364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 10026140 - 10026197
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||| |||| ||||| ||||||| |||||||||||||||| |||||||||    
T  10026140 ggcaaaattacataaatagtcccttaacttaattttaggtaacgttttagtcctttat 10026197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 10027184 - 10027124
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||| ||||||| |||| ||||| ||||||| ||||||||||| |||| |||||||||    
T  10027184 ttaggcataattacataaatagtcccttaacttaattttaggtaacattttggtcctttat 10027124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 33595670 - 33595608
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  33595670 ttttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 33595608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 3218152 - 3218212
Alignment:
Q  51 gcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    ||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||||||    
T  3218152 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttattttt 3218212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 3922895 - 3922827
Alignment:
Q  39 aattgtttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||| ||||| |||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  3922895 aatttttttttggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 3922827  T

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Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 140 - 298
Target Start/End: Complemental strand, 14161397 - 14161242
Alignment:
Q  140 ttaactttatgttcatcttctccaatgttcacacaagcttcttcttctcagtcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattcat 239  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14161397 ttaacgttatgttcatcttctctaatgttcacacaagcttcttct---caatcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattcat 14161301  T
Q  240 ggcatcctcacgcacacaaggttcacacacacaatcatttttcggttccttcatctctg 298  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  14161300 ggcatccttacgcacacaaggttcacacacacaatcattttccggttctttcatttctg 14161242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 14161555 - 14161495
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14161555 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 14161495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 14156163 - 14156217
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcct 103  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  14156163 aggcaaaattacacaaatggtcctataacttatttttaggtaacgttttcgtcct 14156217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 20178363 - 20178432
Alignment:
Q  42 tgtttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||| ||||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||||||    
T  20178363 tgttttaaggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttattttt 20178432  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 20223091 - 20223160
Alignment:
Q  42 tgtttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||| ||||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||||||    
T  20223091 tgttttaaggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttattttt 20223160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 14577217 - 14577154
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  14577217 tttttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 14577154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 30928309 - 30928371
Alignment:
Q  46 tttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttatt 108  Q
    ||||| |||||||||| || | ||||| ||||||| ||||||||||| |||| ||||||||||    
T  30928309 tttagacaaaattacacaattagtcccttaacttaattttaggtaacatttttgtcctttatt 30928371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 35483052 - 35482990
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  35483052 ttttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 35482990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 17844224 - 17844167
Alignment:
Q  52 caaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattt 109  Q
    |||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||||    
T  17844224 caaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttattt 17844167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 30928658 - 30928601
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||    
T  30928658 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 30928601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 27912446 - 27912386
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  27912446 ttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 27912386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 27958865 - 27958805
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  27958865 ttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 27958805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 140 - 298
Target Start/End: Complemental strand, 29706781 - 29706626
Alignment:
Q  140 ttaactttatgttcatcttctccaatgttcacacaagcttcttcttctcagtcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattcat 239  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29706781 ttaacgttatgttcatcttctctaatgttcacacaagcttcttct---caatcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattcat 29706685  T
Q  240 ggcatcctcacgcacacaaggttcacacacacaatcatttttcggttccttcatctctg 298  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  29706684 ggcatccttacgcacacaaggttcacacacacaatcattttccggttctttcatttctg 29706626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 29706936 - 29706877
Alignment:
Q  48 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29706936 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 29706877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 29701543 - 29701597
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcct 103  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  29701543 aggcaaaattacacaaatggtcctataacttatttttaggtaacgttttcgtcct 29701597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49010372 - 49010420
Alignment:
Q  1 taaattgaatcgtcattgaaatgctataaaactttgcaaattgttttta 49  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  49010372 taaatagaatcgtcattgaaatgctataaaactttgcaaatcgttttta 49010420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 41172266 - 41172215
Alignment:
Q  217 aaaaatcaaatctcaaaattcatggcatcctcacgcacacaaggttcacaca 268  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  41172266 aaaaatcaaatcttgaaatccatggcatcctcacgcacacaaggttcacaca 41172215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 31894257 - 31894319
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    ||||||||||||| |||| ||||| ||||||| |||||||||||  |||||||||||||||||    
T  31894257 aggcaaaattacacaaatagtcccttaacttaattttaggtaacactttcgtcctttattttt 31894319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 44307603 - 44307672
Alignment:
Q  42 tgtttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||| ||||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||||||    
T  44307603 tgttttaaggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttattttt 44307672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 31894601 - 31894539
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    ||||||||||||| || | ||||| ||||||| |||||| |||| ||||||||||||||||||    
T  31894601 aggcaaaattacacaattagtcccttaacttaattttagataacattttcgtcctttattttt 31894539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 1511190 - 1511251
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||||||||| || | ||||| ||||||| ||||||||||  ||||||||||||||||||    
T  1511190 ggcaaaattacacaattagtcccttaacttaattttaggtaatattttcgtcctttattttt 1511251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 1511538 - 1511475
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||||||| || | ||||| |||||||  ||||||||||  |||||||||||||    
T  1511538 tttttaggcaaaattacacaattagtcccttaacttaaatttaggtaacactttcgtcctttat 1511475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 10878623 - 10878682
Alignment:
Q  48 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||    
T  10878623 taggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 10878682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 28408591 - 28408529
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  28408591 ttttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 28408529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8722875 - 8722827
Alignment:
Q  1 taaattgaatcgtcattgaaatgctataaaactttgcaaattgttttta 49  Q
    |||||||||||||  | |||||||||| |||||||||||||| ||||||    
T  8722875 taaattgaatcgtattcgaaatgctatgaaactttgcaaattattttta 8722827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 21360451 - 21360514
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||| |||||||||||| |||| ||||| ||||||| |||||||||||||||| |||||||||    
T  21360451 ttttttggcaaaattacataaatagtcccttaacttaattttaggtaacgttttagtcctttat 21360514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 30055555 - 30055488
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||||||||||||||| || | ||||| ||||||| ||||||||||| |||||||||||| |||||    
T  30055555 tttttaggcaaaattacacaattagtcccttaacttaattttaggtaacattttcgtccttttttttt 30055488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 30799668 - 30799612
Alignment:
Q  51 gcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||| || | ||||| ||||||| ||||||||||| ||||||||||||||    
T  30799668 gcaaaattacacaattagtcccttaacttaattttaggtaacattttcgtcctttat 30799612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 37872761 - 37872824
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||| |||||||||||| || | ||||| ||||||  ||||||||||| ||||||||||||||    
T  37872761 ttttttggcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttat 37872824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 46143622 - 46143555
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||||||||||||||| || | || || ||||||  |||||||||||  |||||||||||||||||    
T  46143622 tttttaggcaaaattacacaattagtgccttaactttattttaggtaacactttcgtcctttattttt 46143555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 13294953 - 13294891
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  13294953 ttttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 13294891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 25297679 - 25297737
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||    
T  25297679 aggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 25297737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 30055208 - 30055268
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttatttt 110  Q
    |||||||||||| || | ||||| ||||||| |||||||||||  ||| ||||||||||||    
T  30055208 ggcaaaattacacaattagtcccttaacttaattttaggtaacacttttgtcctttatttt 30055268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 42856801 - 42856865
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    ||||||||||||||| || | ||||| ||| ||  |||||||||||  |||||||||||||||||    
T  42856801 ttaggcaaaattacacaattagtcccttaattttattttaggtaacactttcgtcctttattttt 42856865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 52091773 - 52091714
Alignment:
Q  48 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||| |||| |||||| ||||||||||| |||||| ||||||||||||||    
T  52091773 taggcaaaattacacaaatagtcccacaacttattttttggtaactttttcgtcctttat 52091714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 52090881 - 52090939
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||| | |||| ||||| |||||||||||||||||||||||| |||||||||    
T  52090881 aggcaaaattatataaatagtcccttaacttatttttaggtaacgttttagtcctttat 52090939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 3612591 - 3612656
Alignment:
Q  46 tttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||| ||||||||| || | ||||| ||||||| ||||||||||| ||||||||||||||||||    
T  3612591 tttaggtaaaattacacaattagtcccttaacttaattttaggtaacattttcgtcctttattttt 3612656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 5048383 - 5048446
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||||||| |||| ||| | ||||||| |||||| |||||||||  ||||||||    
T  5048383 tttttaggcaaaattacataaatagtctcttaacttaattttagataacgttttaatcctttat 5048446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 44506394 - 44506331
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttatt 108  Q
    |||| |||||||||||| || |  |||| ||||||| ||||||||||| |||||||||||||||    
T  44506394 ttttgggcaaaattacacaattaatcccttaacttaattttaggtaacattttcgtcctttatt 44506331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 17574372 - 17574434
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    ||||||||||||| || | ||||  ||||||| |||||||||||  |||||||||||||||||    
T  17574372 aggcaaaattacacaattcgtccattaacttaattttaggtaacactttcgtcctttattttt 17574434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 22975695 - 22975629
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||| |||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||||||    
T  22975695 ttttagacaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttattttt 22975629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 8851801 - 8851861
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  8851801 ttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 8851861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 28830105 - 28830041
Alignment:
Q  43 gtttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||||| || | ||||| ||||||  |||||| ||||  |||||||||||||    
T  28830105 gtttttaggcaaaattacacaattagtcccttaactttattttagctaacactttcgtcctttat 28830041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 8322530 - 8322471
Alignment:
Q  48 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||    
T  8322530 taggcaaaattacagaattcgtcccttaacttaattttaggtaacattttcgtcctttat 8322471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 27360473 - 27360410
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||||||| || | ||||| ||||||  ||||||||||| ||||||||||||||    
T  27360473 tttttaggcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttat 27360410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 30337777 - 30337717
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||||||| | ||||| ||||||| |||||| |||| || |||||||||||    
T  30337777 ttaggcaaaattacagaattagtcccttaacttaattttagataacattatcgtcctttat 30337717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 17846007 - 17846065
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||| || | ||||| ||||||  ||||||||||| ||||||||||||||    
T  17846007 aggcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttat 17846065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 30337424 - 30337481
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||| || | ||||  ||||||| ||||||||||| ||||||||||||||    
T  30337424 ggcaaaattacacaattagtccattaacttaattttaggtaacattttcgtcctttat 30337481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 19832259 - 19832206
Alignment:
Q  217 aaaaatcaaatctcaaaattcatggcatcctcacgcacacaaggttcacacaca 270  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||||||    
T  19832259 aaaaatcaaatcttgaaagacatggcatcctcacgcacacaaggttcacacaca 19832206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 12115300 - 12115240
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||| || | ||||| ||||||| ||||||||||| ||||||||||||||    
T  12115300 ttaggcaaaattacacaattagtcccttaacttaattttaggtaacattttcgtcctttat 12115240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 7113863 - 7113926
Alignment:
Q  48 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||||||    
T  7113863 taggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttattttt 7113926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 19897170 - 19897233
Alignment:
Q  44 tttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||| |||||||||| | || | ||||| ||||||| ||||||||||| ||||||||||||||    
T  19897170 ttttttggcaaaattatacaattagtcccttaacttaattttaggtaacattttcgtcctttat 19897233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 40290128 - 40290073
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctt 104  Q
    ||||||||||||| || | ||||| ||||||| ||||||||||| |||||||||||    
T  40290128 aggcaaaattacataattagtcccttaacttaattttaggtaacattttcgtcctt 40290073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 17611775 - 17611713
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  17611775 ttttaggcaaaattacataattagtcccttaactttattttaggtaacactttcgtcctttat 17611713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 25780239 - 25780173
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    ||||||| ||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||||||    
T  25780239 ttttaggtaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttattttt 25780173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 35362274 - 35362206
Alignment:
Q  39 aattgtttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||| |||| ||||||||||||| || | ||||| ||||||| |||||||||||| |||||||||||||    
T  35362274 aattcttttaaggcaaaattacacaattagtcccttaacttaattttaggtaacgctttcgtcctttat 35362206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 27843023 - 27843080
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||| || | ||||| ||||||| ||||||||||| ||||||||||||||    
T  27843023 ggcaaaattacataattagtcccttaacttaattttaggtaacattttcgtcctttat 27843080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 15179137 - 15179078
Alignment:
Q  48 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||    
T  15179137 taggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 15179078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 32994502 - 32994443
Alignment:
Q  48 taggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||    
T  32994502 taggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 32994443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 32458133 - 32458075
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||| || | ||||| ||||||| ||||||||||| ||||| ||||||||    
T  32458133 aggcaaaattacacaattagtcccttaacttaattttaggtaacattttcatcctttat 32458075  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 35363340 - 35363278
Alignment:
Q  45 ttttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||||| || | ||||| ||||||  |||||||||||  |||||||||||||    
T  35363340 ttttaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtcctttat 35363278  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 19558218 - 19558161
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    |||||||||||| || | ||||| ||||||| |||||||||||  |||||||||||||    
T  19558218 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtcctttat 19558161  T

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Target: scaffold0311 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 12945 - 12885
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||| || | ||||| ||||||| |||||| |||| ||||||||||||||    
T  12945 ttaggcaaaattacacaattagtcccttaacttaattttagataacattttcgtcctttat 12885  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 136913 - 136973
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||| || | ||||| ||||||  ||||||||||| ||||||||||||||    
T  136913 ttaggcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttat 136973  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 330194 - 330254
Alignment:
Q  47 ttaggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttat 107  Q
    ||||||||||||||| || | ||||| ||||||  ||||||||||| ||||||||||||||    
T  330194 ttaggcaaaattacacaattagtcccttaactttattttaggtaacattttcgtcctttat 330254  T

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Target: scaffold0347 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 11940 - 12001
Alignment:
Q  50 ggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtcctttattttt 111  Q
    |||||||||||| || | ||||| ||||||| ||||||||||| ||||||| |||| |||||    
T  11940 ggcaaaattacacaattagtcccttaacttaattttaggtaacattttcgttcttttttttt 12001  T

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Target: scaffold0347; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 12280 - 12223
Alignment:
Q  49 aggcaaaattacagaaatggtcccataacttatttttaggtaacgttttcgtccttta 106  Q
    ||||||||||||| || | ||||| ||||||| |||||||||||  ||||||||||||    
T  12280 aggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgtccttta 12223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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