View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_6 (Length: 569)
Name: NF19913_high_6
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 35921099 - 35921649
Alignment:
| Q |
1 |
ataatgtcgcactcagacgacgaaatcacgaaaaatcaagaaattatttaagagtgtattaaaataataggtgtctaatcatgactttgatatttgatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35921099 |
ataatgtcgcactcagacgacgaaatcacgaaaaataaagaaattatttaagagtgtattaaaatcataggtgtctaatcatgactttgatatttgatta |
35921198 |
T |
|
| Q |
101 |
ttgtatataa-caaaatagtatagaaagttaatttaattatctcatgaggaatgatttagtttttgcataaaacaaaatttgaatctcttaagcaaacaa |
199 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35921199 |
ttgtatataaacaaaatagtatagaaagttaatttaattatctcatgaggaatgatttagtttttgcataaaaccaaatttgaatctcttaagcaaacaa |
35921298 |
T |
|
| Q |
200 |
ggttagacagatagattccacttaatgtggtgagttaaatttctgttaaaattagtcattgataaaattggtggatcctttccttcnnnnnnnnnnnnnt |
299 |
Q |
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| T |
35921299 |
ggttagaaagatagattccacttaatgtggtgagttaaatttctgttaaaattagtcattgataaaattggtggatcctttccttcaaaaaaaaaaaaaa |
35921398 |
T |
|
| Q |
300 |
ttggtggatccttcaaacttttacatatttttgacaaaaaatatgcaaccactaaggcaagggtcggtggtccaagtttttaaaaatggcaaacattctg |
399 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921399 |
atggtggatccttcatactttta-atatttttgacaaaaaatatgcaaccactaaggcaagggtcggtggtccaagtttttaaaaatggcaaacattctg |
35921497 |
T |
|
| Q |
400 |
acaattatatataatagaactagaatcacaatctcataatctaggaagacaaatttcaaggcactgttgaattgttggttacatgtgtggtaagttacca |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921498 |
acaattatatataatagaactagaatcacaatctcataatctaggaagacaaatttcaaggcactgttgaattgttggttacatgtgtggtaagttacca |
35921597 |
T |
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| Q |
500 |
aaagtatatgtaattgttttgtcacaagaagtaaaagaagttgttaactggg |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921598 |
aaagtatatgtaattgttttgtcacaagaagtaaaagaagttgttaactggg |
35921649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 1523386 - 1523349
Alignment:
| Q |
6 |
gtcgcactcagacgacgaaatcacgaaaaatcaagaaa |
43 |
Q |
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| T |
1523386 |
gtcgcactaagacgacgaaatcacgaaaaaacaagaaa |
1523349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 14801808 - 14801776
Alignment:
| Q |
3 |
aatgtcgcactcagacgacgaaatcacgaaaaa |
35 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
14801808 |
aatgtcgcactaagacgacgaaatcacgaaaaa |
14801776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 8914691 - 8914659
Alignment:
| Q |
3 |
aatgtcgcactcagacgacgaaatcacgaaaaa |
35 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
8914691 |
aatgtcgcactaagacgacgaaatcacgaaaaa |
8914659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 27856166 - 27856134
Alignment:
| Q |
3 |
aatgtcgcactcagacgacgaaatcacgaaaaa |
35 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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|
| T |
27856166 |
aatgtcgcactcagacgacgaaatcacaaaaaa |
27856134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 31269084 - 31269116
Alignment:
| Q |
3 |
aatgtcgcactcagacgacgaaatcacgaaaaa |
35 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
31269084 |
aatgtcgcactaagacgacgaaatcacgaaaaa |
31269116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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