View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_61 (Length: 281)
Name: NF19913_high_61
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 38466525 - 38466257
Alignment:
| Q |
16 |
aggaattcattgagggatttgagaccctcttctgtgtgaagatctgagaaggtaacagccattagggtttgcgatgaatcggtggcggagagtgaagacg |
115 |
Q |
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| T |
38466525 |
aggaattcattgagggatttgagaccctcttctgtgtgaagatctgagaaggtaacagccattagggtttgcgatgaatcggtggcggagagtgaagacg |
38466426 |
T |
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| Q |
116 |
aaaatagagtgtgtcgagtgttgagtgttg-------agagagagttttgggcttcaataattggtatttatatgatgcataatctcaaaccctaaatca |
208 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38466425 |
aaaatagagtgtgtcgagtgttgagtgttgagagttgagagagagttttgggcttcaataattggtatttatatgatgcataatctcaaaccctaaatca |
38466326 |
T |
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| Q |
209 |
tacacaccccactcttcaatat---tattannnnnnnctcaaaaatattattagtattagtatattctt |
274 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
38466325 |
tacacaccccactcttcaatattagtattatttttttctcaaaaatattattagtattagtatattctt |
38466257 |
T |
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