View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_63 (Length: 268)
Name: NF19913_high_63
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 22192980 - 22192743
Alignment:
| Q |
16 |
atgataataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacacttttttagt |
115 |
Q |
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| T |
22192980 |
atgataataacaaaccttcctttgaacagattgatatcatgaatgccctcattgatggacaacttagtgaaacaataagtgtttgaaacacttttttagt |
22192881 |
T |
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| Q |
116 |
tgaataataagtgtttgatgacaacagaaatcaatcttaggagatacacatgcaactacaaaaacatatgtagggatatcaccttcttccttgattttgg |
215 |
Q |
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| T |
22192880 |
tgaataataattgtttgataacaacagaagtcaatcttaggagatacacatgcaactacaaaaacatatgtagggatatcaccttcttccttgattttgg |
22192781 |
T |
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| Q |
216 |
catactttagcatcacaaccactggtccaccttgcttc |
253 |
Q |
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| T |
22192780 |
catactttagcatcacaaccactggtccaccttgcttc |
22192743 |
T |
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 27133443 - 27133530
Alignment:
| Q |
21 |
aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt |
108 |
Q |
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| T |
27133443 |
aataacaaaccttcccttgaatagattaatctcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt |
27133530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 27133620 - 27133690
Alignment:
| Q |
178 |
aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccactggtccacctt |
248 |
Q |
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| T |
27133620 |
aacagatgtaggggtaaaaccttcttccttgatcttggtatacttcagcatcacaaccacggatccacctt |
27133690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 26410675 - 26410589
Alignment:
| Q |
21 |
aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt |
108 |
Q |
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| T |
26410675 |
aataacaaaccttcccttgaa-agattaatctcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt |
26410589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 26410499 - 26410429
Alignment:
| Q |
178 |
aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccactggtccacctt |
248 |
Q |
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| T |
26410499 |
aacagatgtaggggtaaaaccttcttccttgatcttggcatacttcagcatcacaaccacggatccacctt |
26410429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 24028178 - 24028229
Alignment:
| Q |
56 |
gaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacact |
107 |
Q |
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| T |
24028178 |
gaatgtcagcattgatgaacaacttagtgtaagaataagtgtttgaaacact |
24028229 |
T |
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