View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_65 (Length: 265)
Name: NF19913_high_65
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_65 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 15584691 - 15584522
Alignment:
| Q |
21 |
gtctaaatgttttaatttagtgtgaaaccttcgtttgatcagatacttatatatcctatccagaaaatttcggtgtgtacannnnnnnctctcgcaaata |
120 |
Q |
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| T |
15584691 |
gtctaaatgtattaatttagtgtgaaacctttgtttgatcacatattcatatatcctatccagaatatttcggtgtgtacatttttttctctcgcaaata |
15584592 |
T |
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| Q |
121 |
ctcagaaaattcattctctgttcattaggaatttctttgctttctttaaattttgtgtattgataacaag |
190 |
Q |
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| T |
15584591 |
cccagaaaattctttctctgttcattaggaatttctttgctttctttcaattttgtgtattgataacaag |
15584522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 15581733 - 15581557
Alignment:
| Q |
13 |
gagaccaagtctaaatgttttaatttagtgtgaaaccttcgtttgatcagatacttatatatcctatccagaaaatttcggtgtgtacannnnnnnctct |
112 |
Q |
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| T |
15581733 |
gagaccaagtctaaatgttttaatttagtgtgaaaccttcatttgatcacatattcatatatcctatccagaaaatttcgaggtgtataacttt---tct |
15581637 |
T |
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| Q |
113 |
cgcaaatactcagaaaattcattctctgttcattaggaatttctttgctttctttaaattttgtgtattgataacaagcgaaacacaggat |
203 |
Q |
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| T |
15581636 |
cgcaaatacccagaaaa-----------ttcattaggaatttcattgcattctttcaattttgtgtattgacaagaagggaaacacaggat |
15581557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 15550202 - 15550137
Alignment:
| Q |
36 |
tttagtgtgaaaccttcgtttgatcagatacttatatatcctatccagaaaatttcggtgtgtaca |
101 |
Q |
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| T |
15550202 |
tttagtgtgaaaccttcgtttgatcacatattcatatatcctatccagaaaatttcggcgtgtaca |
15550137 |
T |
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