View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_67 (Length: 264)
Name: NF19913_high_67
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_67 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 32355691 - 32355932
Alignment:
| Q |
4 |
gttagattaaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgtcagtcggtgtgtattgtctacacgcagaaaagcaagaagctaa |
103 |
Q |
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| T |
32355691 |
gttagattaagttaaaaaaggactcgtggaagagttcagttgcaaacatgcacatgtctgtgggtgtatagtgtctacac--agaaaagcaagaaactaa |
32355788 |
T |
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| Q |
104 |
agaaccttaacactcactttatttggctaaattgactccctaatctcattgcatttattaacagcttgctcaaccaaattattatcatcccattgcatga |
203 |
Q |
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| T |
32355789 |
agaacattggcactcactttatctggctgaattgactcccaaatctcattgcatttattaacagcttgctcaaccaaattatcatcatcccattgcatga |
32355888 |
T |
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| Q |
204 |
ggtgggcatgcaataatgaagtggtaaaggacatctggttcatt |
247 |
Q |
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| T |
32355889 |
ggtgggcatgcaataatgaagtggcaaagaacatctggtccatt |
32355932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 42302664 - 42302776
Alignment:
| Q |
129 |
gctaaattgactccctaatctca-ttgcatttattaacagcttgctcaaccaaattattatcatcccattgcatgaggtgggcatgcaataatgaagtgg |
227 |
Q |
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| T |
42302664 |
gctaaattgactcccaaatctcatttgcacttattaacaactttctctacaaaattagtatcatctcgttacatgaggtcaaaatgcaatattgaagtgg |
42302763 |
T |
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| Q |
228 |
taaaggacatctg |
240 |
Q |
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| T |
42302764 |
caaagaacatctg |
42302776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 17921912 - 17922065
Alignment:
| Q |
87 |
gaaaagcaagaagctaaagaaccttaacactcactttatttggctaaattgactccctaatctcattgcatttattaacagcttgctcaaccaaattatt |
186 |
Q |
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| T |
17921912 |
gaaaagcaagaagttaaagaatatttgcactcacttgatcaggcagaattgactcccaaatctcattgcatttattaatagcttgagcaaccaaactatt |
17922011 |
T |
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| Q |
187 |
atcatcccattgcatgaggtgggcatgcaataatgaagtggtaaaggacatctg |
240 |
Q |
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| T |
17922012 |
atcatccgtatgcattaggcaagcatgcaataatgaagtggaaaagaacatctg |
17922065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 17955594 - 17955692
Alignment:
| Q |
5 |
ttagattaaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgtcagtcggtgtgtattgtctacacgcagaaaagcaagaagctaaa |
104 |
Q |
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| T |
17955594 |
ttagattaaattaaaaacggaatcatggt-----ttagttgcaaacatgcacatgtctgtgggtgtacattgtccacaaacggaaaagcaagatgttaaa |
17955688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 17969054 - 17969103
Alignment:
| Q |
11 |
taaaataaaaaaggaatcatggtagagttcagttgcaaacatgcacatgt |
60 |
Q |
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| T |
17969054 |
taaattaaaaaaggaatcatagtagtgttcagttgaaaacatacacatgt |
17969103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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