View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_68 (Length: 262)
Name: NF19913_high_68
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_68 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0415 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 2831513 - 2831252
Alignment:
| Q |
1 |
cttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttg |
100 |
Q |
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| T |
2831513 |
cttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttg |
2831414 |
T |
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| Q |
101 |
gaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgc |
200 |
Q |
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| T |
2831413 |
gaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgc |
2831314 |
T |
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| Q |
201 |
aagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaa |
262 |
Q |
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| T |
2831313 |
aagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaa |
2831252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3630 - 3891
Alignment:
| Q |
1 |
cttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttg |
100 |
Q |
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| T |
3630 |
cttgaaagaggaaagagatacactcaagatagagtgtgaaaacctcaaatcttttcgcaaacgaagggatgaggctaaagtgagtagcagatcacaattg |
3729 |
T |
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| Q |
101 |
gaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgc |
200 |
Q |
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| T |
3730 |
gaaggcggggatcttcatactcttattgaagaaatcagacaagaattgaatcacgagaaggacatgaatgcaaatctcagactacagttaaataagacac |
3829 |
T |
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| Q |
201 |
aagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaa |
262 |
Q |
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| T |
3830 |
aggaatcaaatgctgaactagttcttgctgttcaggacctcgacgcaatgttagagcagaaa |
3891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 40799002 - 40799263
Alignment:
| Q |
1 |
cttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttg |
100 |
Q |
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||||||||| ||||| || ||||||||| ||| ||||| || ||| ||||| | |||||| | ||| || || |||||||| | ||| ||||| ||| |
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| T |
40799002 |
cttgaaagaggaaagagatacactcaagatagagtgtgaaaacctcaaatcttttcgcaaacgaagggatgaggctaaagtgagtagcagatcacaattg |
40799101 |
T |
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| Q |
101 |
gaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgc |
200 |
Q |
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| T |
40799102 |
gaaggcggggatcttcatactcttattgaagaaatcagacaagaattgaatcacgagaaggacatgaatgcaaatctcagactacagttaaataagacac |
40799201 |
T |
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| Q |
201 |
aagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaa |
262 |
Q |
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| T |
40799202 |
aggaatcaaatgctgaactagttcttgctgttcaggacctcgacgcaatgttagagcagaaa |
40799263 |
T |
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