View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19913_high_69 (Length: 258)
Name: NF19913_high_69
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_69 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 43163088 - 43163239
Alignment:
| Q |
90 |
ggtattgtaggttattgacccaattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggaatatggttagtaatatttataa |
189 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
43163088 |
ggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggagtaaggttagtagtatttataa |
43163187 |
T |
|
| Q |
190 |
atattcctttaatgtttgtggagtggactgacttgatcactctgctgacatt |
241 |
Q |
| |
|
||||| |||| ||||| |||| |||||||| ||||||||| || ||||||| |
|
|
| T |
43163188 |
atatttctttgttgtttatggaatggactgatttgatcactttgttgacatt |
43163239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 27399854 - 27399945
Alignment:
| Q |
88 |
ttggtattgtaggttattgacccaattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggaatatggttagta |
179 |
Q |
| |
|
|||| ||| ||||||||| |||| || |||||||||||| ||||||| || || | |||||||| || ||||||||||| || |||||||| |
|
|
| T |
27399854 |
ttggcattataggttattcaccccatccatgatcagaccttttatctaaccattgggcataagaaaaagcttaaggaggagtacggttagta |
27399945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 51459036 - 51459159
Alignment:
| Q |
88 |
ttggtattgtaggttattgacccaattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggaatatggttagtaatatttat |
187 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
51459036 |
ttggtaatgtaggttattgaccccattcatgatcagaccatttatctgactatggagcataagatgaaacttaagaaagagtatggttagtaatatttat |
51459135 |
T |
|
| Q |
188 |
aaatattcctttaatgtttgtgga |
211 |
Q |
| |
|
||| ||||||| |||||||||| |
|
|
| T |
51459136 |
aaacgttcctttgttgtttgtgga |
51459159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 51485393 - 51485492
Alignment:
| Q |
88 |
ttggtattgtaggttattgacccaattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggaatatggttagtaatatttat |
187 |
Q |
| |
|
|||||| ||||||||||| | || || ||||| |||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
51485393 |
ttggtaatgtaggttattcatcccatccatgaccagaccttttatctgactcgagagcataagaggaaacttaaggaggagtatggttagtaatgtttat |
51485492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 51505527 - 51505626
Alignment:
| Q |
88 |
ttggtattgtaggttattgacccaattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggaatatggttagtaatatttat |
187 |
Q |
| |
|
|||||| ||||||||||| |||| || ||||||||| | ||||| ||||||| |||||||||| || ||||||||||| |||||||||| || ||||| |
|
|
| T |
51505527 |
ttggtaatgtaggttattcaccccatccatgatcagcacttttatttgactatcgagcataagaagaggcttaaggaggagtatggttagttatgtttat |
51505626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 30200897 - 30200803
Alignment:
| Q |
92 |
tattgtaggttattgacccaattcatgatcagaccatttatctgactatggagcataagatgaaacttaaggaggaatatggttagtaatattta |
186 |
Q |
| |
|
||||||||||| || |||| || ||||||||||| ||||| ||||||| |||||||| | || ||||||||||| ||||||||||||| |||| |
|
|
| T |
30200897 |
tattgtaggttgttcaccccatccatgatcagacattttatttgactatcgagcataaaaagaggcttaaggaggagtatggttagtaatcttta |
30200803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University