View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_73 (Length: 251)
Name: NF19913_high_73
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_73 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 43224091 - 43224316
Alignment:
| Q |
10 |
aagaatataaacgacatgagaacnnnnnnnntgctcatgtgcatgctccaatcggtccatctggtcctagccattgaacctaaaatgacagacaatattg |
109 |
Q |
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| T |
43224091 |
aagaataaaaacgacatgagaacaaaaaaaatgctcatgtgcatgctccaatcggcccatctggtcctagccattgaacctaaaatgacagaca---ttg |
43224187 |
T |
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| Q |
110 |
tagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgcgatggtggacgaacaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43224188 |
tagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgtgatggtggacgaacaa |
43224287 |
T |
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| Q |
210 |
ccatcgttaatttcctgatgccacaaaat |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43224288 |
tcatcgttaatttcctgatgccacaaaat |
43224316 |
T |
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