View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_76 (Length: 250)
Name: NF19913_high_76
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_76 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 38356471 - 38356236
Alignment:
| Q |
11 |
caaaggcaaactaagttacaaagtagaaccttgaatcctggttagaaagcaaaaaacatgggttcaaaatgtcaaagcttctatctttttctttatcaat |
110 |
Q |
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| T |
38356471 |
caaaggcaaactaagttacaaagtagaaccttgaatcctggttagaaagcaaaaaacatgggttcaaaatgtcaaagcttctatcttttactttatcaat |
38356372 |
T |
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| Q |
111 |
gaaatatacatcattttcagttataaaaagaagggnnnnnnnnnctttcccttgtttagtgtttattgtttccattagaaagaagnnnnnnncaactttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38356371 |
gaaatatacatcattttcagttataaaaagaagggtttttt----tctcccttgtttagtgtttattgtttccattagaaagaagaaaaaaacaactttt |
38356276 |
T |
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| Q |
211 |
tatttcaaatgggtgttctacaatctatatttctctacct |
250 |
Q |
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| T |
38356275 |
tgtttcaaatgggtgttctacaatctatatttctctacct |
38356236 |
T |
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