View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_88 (Length: 238)
Name: NF19913_high_88
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_88 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 46151635 - 46151856
Alignment:
| Q |
17 |
agatttcagcttcatcaacaccactaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatatgagtttgaatgtttatgtg |
116 |
Q |
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| T |
46151635 |
agatttcagcttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatatgagtttgaatgtttatgtg |
46151734 |
T |
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| Q |
117 |
tgatggtaatttcttggagagaatatacggtggagaagatgaagtggctgaagaattggtggttgaggattaggcttgatcaagtagtagaatagtttat |
216 |
Q |
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| T |
46151735 |
tgatgataatttcttggagagaatatacggtggagaagacgaagtggctgaagaattggtggttgaggattaggcttgatcaagtagtagaatagtttat |
46151834 |
T |
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| Q |
217 |
ggaatggatttgtgagaaattt |
238 |
Q |
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| T |
46151835 |
ggaatggatttgtgagaaattt |
46151856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 45991717 - 45991936
Alignment:
| Q |
17 |
agatttcagcttcatcaacaccactaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatatgagtttgaatgtttatgtg |
116 |
Q |
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| T |
45991717 |
agatttcaacttcatcaacaccaacaatcacaacaacaaaaaatatctaattaaattttcttcttggattcaaaggcat--gagtttgaatgtttatgtt |
45991814 |
T |
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| Q |
117 |
tgatggtaatttcttggagagaatatacggtggagaagatgaagtggctgaagaattggtggttgaggattaggcttgatcaagtagtagaatagtttat |
216 |
Q |
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| T |
45991815 |
tgatgataatttcttggagaaaatatacggcggagaagacgaagtggctgaagaattggtggttgaggattaggcttgatcaagtagtagaatagtttat |
45991914 |
T |
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| Q |
217 |
ggaatggatttgtgagaaattt |
238 |
Q |
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| T |
45991915 |
ggaatggatctgtgagaaattt |
45991936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 3871745 - 3871843
Alignment:
| Q |
40 |
ctaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatatgagtttgaatgtttatgtgtgatggtaatttcttggagagaa |
139 |
Q |
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| T |
3871745 |
ctaatcacaacaacaacaaatc-ctaattaaaatttcttcttggattgaaaggctt--gagtttgaatgttcatgtgtgatgataatttatgggagggaa |
3871841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 3871909 - 3871946
Alignment:
| Q |
201 |
tagtagaatagtttatggaatggatttgtgagaaattt |
238 |
Q |
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| T |
3871909 |
tagtagaatagtttatggaatggatttgtgagaaattt |
3871946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 19802334 - 19802388
Alignment:
| Q |
27 |
ttcatcaacaccactaatcacaacaacaacaaatatctaattaaattttcttctt |
81 |
Q |
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| T |
19802334 |
ttcatcaccaccaacaatctcaacaacaacaaatttctaatttaattttcttctt |
19802388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 5225094 - 5225030
Alignment:
| Q |
17 |
agatttcagcttcatcaacaccactaatcacaacaacaacaaatatctaattaaattttcttctt |
81 |
Q |
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|||||| | |||||||||||||| |||| |||| || ||||| |||||||||||||||||||| |
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| T |
5225094 |
agatttaaacttcatcaacaccaacaatctaaacagcatcaaatttctaattaaattttcttctt |
5225030 |
T |
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