View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_high_9 (Length: 541)
Name: NF19913_high_9
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Original strand, 2742948 - 2743460
Alignment:
| Q |
11 |
cacagatgattgattatgtagttcggctaactatgcctacgtctctgatagcagagggcgaatgccgtagtttattgattatgcaatacttacgattaca |
110 |
Q |
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| T |
2742948 |
cacagatgattgattacgtagttcggctaactatgcctacgtctctgatagcagagggcaaatgccgtagtttattgattatgcaatacttatgattaca |
2743047 |
T |
|
| Q |
111 |
gagtatcatgaatcgcatgctcgagcgtcttccacttatcagttaatacaagtcttactcaacaatatgttcgtaaggttattaaagctatccatttttg |
210 |
Q |
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| T |
2743048 |
gagtatcatgaatcgcatgctcgagcgtcttccacttatcagttaatacaagtcttactcaacaatatgttcgtaaggttattaaagctatccatttttg |
2743147 |
T |
|
| Q |
211 |
gctattaatatgcatatatttatgaaatatatgtaaatttaaaaatgataactaccatcacatatcatggtcataagaaactaacaagaaagaaatatta |
310 |
Q |
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| T |
2743148 |
gctattaatatgcatatatttatgaaatatatgtaaatttaaaaatgataactaccgtcacatatcatggtcataagaaactagcaagaaagaaatgtta |
2743247 |
T |
|
| Q |
311 |
gcaataatatataaatcaaagaaatacaacttcctctcaagcgaatctaatactcctcccttacaacacctcatccgaaccaaagaaatcttccaatata |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2743248 |
gcaataatatataaatcaaagaaatacaacttcctctcaagcgaatctaatactcctcccttacaacacctcatccgaaccaaagaaaacttccaatata |
2743347 |
T |
|
| Q |
411 |
cgaagttgcacatcataacaaactttccaccagaaatacaaaccagatgttgaatatggctcatattcgctgataagttggcagatgctcgagcgtggta |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2743348 |
cgaagttgcacatcataacaaactttccaccagaaatacaaaccagatgttgaatatggctcatattcgctgataagttggcagatgctcgagcgtggta |
2743447 |
T |
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| Q |
511 |
tagcagagtgagt |
523 |
Q |
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||||||||||||| |
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| T |
2743448 |
tagcagagtgagt |
2743460 |
T |
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