View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_high_91 (Length: 238)

Name: NF19913_high_91
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_high_91
NF19913_high_91
[»] chr3 (2 HSPs)
chr3 (18-221)||(53619256-53619462)
chr3 (18-67)||(9152519-9152568)
[»] chr6 (3 HSPs)
chr6 (18-78)||(11121745-11121805)
chr6 (18-78)||(22427914-22427974)
chr6 (18-78)||(24316949-24317009)
[»] chr4 (4 HSPs)
chr4 (18-78)||(2191524-2191584)
chr4 (18-65)||(19327370-19327417)
chr4 (18-72)||(10564888-10564942)
chr4 (18-50)||(37010295-37010327)
[»] chr1 (5 HSPs)
chr1 (22-78)||(1609439-1609495)
chr1 (18-78)||(15853019-15853079)
chr1 (18-78)||(19050351-19050411)
chr1 (18-78)||(32830260-32830320)
chr1 (18-67)||(9090177-9090226)
[»] chr2 (3 HSPs)
chr2 (18-78)||(4160120-4160180)
chr2 (18-78)||(9894203-9894263)
chr2 (22-78)||(30750362-30750418)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 53619256 - 53619462
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcactannnnnnnngatgtcattttgcccgtggcctat--nnnnn 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||        ||||||||||||||| ||||||||           
T  53619256 aataatatatatgagcaattgacatcatattagcgtagggttctaacttatttgggcactattttttttgatgtcattttgcccttggcctatcaaaaaa 53619355  T
Q  116 nnngttggtggccatcctttccttttgtatggcctaatagttgaaaac-nnnnnnngaactgttttctttcataatcaataattgactttttaacaatcc 214  Q
       |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  53619356 aaagttggtggccatcctttccttttgtatggcctaatagttgaaaacaaaaaaaagaactgttttctttcataatcaataattgactttttaacaatcc 53619455  T
Q  215 caacatg 221  Q
    |||||||    
T  53619456 caacatg 53619462  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 9152519 - 9152568
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaactta 67  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  9152519 aataatatatatgagcaattgacaacaaataagagtatggttccaactta 9152568  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 11121745 - 11121805
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    |||||||||||||||||||||||| || ||||| ||| ||| |||||||| |||| |||||    
T  11121745 aataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacacta 11121805  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 22427974 - 22427914
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    ||||||||||||||||||||||||  ||||||| ||| || ||||||||| |||| |||||    
T  22427974 aataatatatatgagcaattgacaaaatattagagtagggctccaacttaattggacacta 22427914  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 24316949 - 24317009
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    |||||||||||||||||||||||| ||  |||| ||| ||| |||||||| |||| |||||    
T  24316949 aataatatatatgagcaattgacaacaatttagagtagggtaccaacttagttggacacta 24317009  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 2191584 - 2191524
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    |||||||||||||||||||||||| || ||||| ||| ||| |||||||| |||| |||||    
T  2191584 aataatatatatgagcaattgacaacagattagagtagggtcccaacttagttggacacta 2191524  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 19327370 - 19327417
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaact 65  Q
    ||||||||||||||||||||||||  ||||||| ||| ||||||||||    
T  19327370 aataatatatatgagcaattgacaatatattagagtagggttccaact 19327417  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 10564942 - 10564888
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgg 72  Q
    |||||||||||||||||||||||| || ||||| ||| ||| |||||||| ||||    
T  10564942 aataatatatatgagcaattgacaacagattagagtagggtaccaacttagttgg 10564888  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 37010327 - 37010295
Alignment:
Q  18 aataatatatatgagcaattgacatcatattag 50  Q
    |||||||||||||||||||||||| ||||||||    
T  37010327 aataatatatatgagcaattgacaacatattag 37010295  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 1609439 - 1609495
Alignment:
Q  22 atatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    |||||||||||||| ||||| |||||||| ||| |||||||||||| |||| |||||    
T  1609439 atatatatgagcaactgacaacatattagagtagggttccaacttaattggacacta 1609495  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 15853079 - 15853019
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    |||||||||||||||||||||||| || ||||| ||| ||| |||||||| |||| |||||    
T  15853079 aataatatatatgagcaattgacaacagattagagtagggtcccaacttagttggacacta 15853019  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 19050351 - 19050411
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    ||||||||||||||||||||| ||| | ||||| ||| |||||||||||| |||| |||||    
T  19050351 aataatatatatgagcaattggcattagattagagtagggttccaacttaattggacacta 19050411  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 32830260 - 32830320
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    |||||||||||||||||||||||| || ||||| ||| |||| ||||||| |||| |||||    
T  32830260 aataatatatatgagcaattgacaacagattagagtagggtttcaacttagttggacacta 32830320  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 9090177 - 9090226
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaactta 67  Q
    ||||||||||||||||||||| || || || || ||||||||||||||||    
T  9090177 aataatatatatgagcaattggcaacagataagagtatggttccaactta 9090226  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4160120 - 4160180
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    ||||||||||||||||||||||||  ||||||  |||||   |||||||| ||||||||||    
T  4160120 aataatatatatgagcaattgacaaaatattatagtatgtcaccaacttagttgggcacta 4160180  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 9894203 - 9894263
Alignment:
Q  18 aataatatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    ||||||||||||||||||||| || |||||||| ||| | | |||||||| |||| |||||    
T  9894203 aataatatatatgagcaattggcaacatattagggtaggataccaacttagttggacacta 9894263  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 30750418 - 30750362
Alignment:
Q  22 atatatatgagcaattgacatcatattagcgtatggttccaacttatttgggcacta 78  Q
    |||||||||||||| ||| |||||||||| |||  ||||||||||| |||| |||||    
T  30750418 atatatatgagcaactgatatcatattagagtagtgttccaacttagttggacacta 30750362  T

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