View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19913_high_93 (Length: 236)
Name: NF19913_high_93
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_93 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45463525 - 45463762
Alignment:
| Q |
1 |
agcatatacctcttcatgaaggatgtcagatgatccttatatgta----accagaaaatcctgata------------cactatttcggaaaacccctcc |
84 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45463525 |
agcatatagctcttcatgaaggatatcagatgatccttatatgtatgtaaccagaaaatcctgataaataatagccaacactatttcggaaaacccctcc |
45463624 |
T |
|
| Q |
85 |
ataaccagctctattgtttgttatacataagtaaattatatcgtctatatactttgaatgtaggattaattcattgtaaattagtccatttgggtcatat |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45463625 |
ataaccagctctattgtttgttatacataagtaaattatatcgtctatatactttgaatgtaggattaattcattgtaaattagtccatttgggtcatat |
45463724 |
T |
|
| Q |
185 |
ataatttcaaagtgaatttgcaatcatcacatcaaagt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45463725 |
ataatttcaaagtgaatttgcaatcatcacatcaaagt |
45463762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University