View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19913_high_98 (Length: 227)
Name: NF19913_high_98
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_high_98 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 14128791 - 14128610
Alignment:
| Q |
46 |
aatacaatttatctataaaagaaaatttaacaaagtacattgctaacaaataaataatcattttgaaatctaaattggaaatattgggcactttagtcca |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14128791 |
aatacaatttatctataaaagaaaatttaacaaagtacattgctaacaaataaatcatcattttgaaatctaaattggaaatattgggcactttagtcca |
14128692 |
T |
|
| Q |
146 |
caaattttaagaaactataatttattcttataaattgaaacagtttcttttcaaaaatcatttatcaaggcaataaacaact |
227 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14128691 |
caaatttcaagaaactataatttattcttataaattgaaacagtttcttctcaaaaatcatttatcaaggcaataaacaact |
14128610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 14128856 - 14128807
Alignment:
| Q |
6 |
aagttacaaccaaatacagtacatatattagtaacaagacaatacaattt |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14128856 |
aagttacaaccaaatacagtacatatattagtaacaagacaatacaattt |
14128807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University