View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_1 (Length: 808)
Name: NF19913_low_1
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 19 - 800
Target Start/End: Complemental strand, 6593846 - 6593064
Alignment:
| Q |
19 |
accagtttgggtcctttgtcagttnnnnnnnccatttcatatagggtttccaattgagaggttgtttttgccacaacagagggatttttgacaaatcttt |
118 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6593846 |
accagtttgggtcctttgtcagttaaaaaaaccatttcatatagggtttccaattgagaggttgtttttgccacaacaaagggatttttgacaaatcttt |
6593747 |
T |
|
| Q |
119 |
attattgaacaattggtaatttggtataattttttatggttcnnnnnnnnnnnacaataaataactatctcatttcattaagcaataatagtttagatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593746 |
attattgaacaattggtaatttggtataattttttatggttctttttttttttacaataaataactatctcatttcattaagcaataatagtttagatac |
6593647 |
T |
|
| Q |
219 |
aatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggccactctagcaagctatgaacctcatttgtttgtatcataataaattcaaacctg |
318 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6593646 |
aatcaggcatatcaatgaacaaatgaaaactaggttgagatgtggccactctagcaagccatgaacctcatttgtttgtatcataataaattcaaacctg |
6593547 |
T |
|
| Q |
319 |
aaagtttttgaaaaaagacgggagtgaatttctacattctcttataagtgctccaagtttagattcattcttaagactactatggaaactatcaactact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593546 |
aaagtttttgaaaaaagacgggagtgaatttctacattctcttataagtgctccaagtttagattcattcttaagactactatggaaactatcaactact |
6593447 |
T |
|
| Q |
419 |
actctctcgaagagtccaacttaaaagtcacattattaatatgcaaatccttcaaccatctgatagcgaacagta------aagcctctccttcatcaac |
512 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6593446 |
-----ctcgtagagtccaacttaaaagtcgcattattaatatgcaaatccttcaaccatctgatagcgaacagtagacctaaagcctctccttcatcaac |
6593352 |
T |
|
| Q |
513 |
ttttaggatgggtgaaatccattccgtttgctaaaacaaaacttccatgatcgtctctaatacacataccaatccccactatgttacttgacctagagaa |
612 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593351 |
ttttaggatgggtgaaattcattccgtttgctaaaacaaaacttccatgatcgtctctaatacacataccaatccccactatgttacttgacctagagaa |
6593252 |
T |
|
| Q |
613 |
aactgcatcgacattacacttgtagctcggtttcttccatatgtgattgacaacatgttgctgtgccgctgcattatttcagcatgtctgtgcgttatgc |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || ||||||| |
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| T |
6593251 |
aactgcatcgacattacacttgtagctcggtttcttccatatgtgattgacaacttgttgctgtgccactgcattatttcagcatgtctttgtgttatgc |
6593152 |
T |
|
| Q |
713 |
caactcgagagtagattcatactcctctcgccaacaacgtcttattgaagaggaattgtttatcctctaatcaactaaatagtattat |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593151 |
caactcgagagtagattcatactcctctcgccgacaacgtcttattgaagaggaattgtttatcctctaatcaactaaatagtattat |
6593064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 172 - 418
Target Start/End: Original strand, 10980867 - 10981115
Alignment:
| Q |
172 |
acaataaataactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggccactcta |
271 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| ||| | ||||||||||||| || | ||||||||| | ||| |
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| T |
10980867 |
acaataaataactatatcatttcatta-gcaataataggttcaatacaatcaggcatctcagtaaacaaatggaaactagataacgatgtggccgcccta |
10980965 |
T |
|
| Q |
272 |
gcaag-ctatg---aacctcatttgtttgtatcataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagt |
367 |
Q |
| |
|
||||| ||||| ||||| |||||||||| || ||||||| || |||||| ||||| |||||||||| | || |||||||||||| ||||| |||| | |
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| T |
10980966 |
gcaagactatgagcaaccttatttgtttgtctcctaataaactc-aacctgcgagtttgtgaaaaaagatgagaatgaatttctacactctctaataatt |
10981064 |
T |
|
| Q |
368 |
gctccaagtttagattcattcttaagactactatggaaactatcaactact |
418 |
Q |
| |
|
||||||| | |||||||| ||| || | |||||||||||||||||||| |
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|
| T |
10981065 |
gctccaaaatcagattcatctttacgattgttatggaaactatcaactact |
10981115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 431 - 640
Target Start/End: Complemental strand, 6904458 - 6904237
Alignment:
| Q |
431 |
agtccaacttaaaagtcacattattaatatgcaaatccttcaaccatctgatagcgaacag----------taaagcctctccttcatcaacttttagga |
520 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||||||||||||||||||||||||| | |||| |||| |||||| ||||||||||||||||| |
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| T |
6904458 |
agtctaactcaaaaatcacattactaatatgcaaatccttcaaccatctgataacaaacaaacagtaggcctaaatcctctcattcatcaacttttagga |
6904359 |
T |
|
| Q |
521 |
tgggtgaaatccattccg--tttgctaaaacaaaacttccatgatcgtctctaatacacataccaatccccactatgttacttgacctagagaaaactgc |
618 |
Q |
| |
|
||| |||| |||| | |||||||||||||||||||| | | || ||||||||||||| ||||||||||| | |||||||||| |||||| |||| |
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|
| T |
6904358 |
tggacaaaattcattatgcttttgctaaaacaaaacttccttaaacgcctctaatacacatttcaatccccactctactacttgacctggagaaagctgc |
6904259 |
T |
|
| Q |
619 |
atcgacattacacttgtagctc |
640 |
Q |
| |
|
||||| |||| ||| |||||| |
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| T |
6904258 |
atcgatgttacccttatagctc |
6904237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 175 - 276
Target Start/End: Complemental strand, 6904680 - 6904580
Alignment:
| Q |
175 |
ataaataactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggccactctagca |
274 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||| |||||||||| |||||| |||| ||||||| ||||| ||||| |
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|
| T |
6904680 |
ataaataactatctcatttgatta-gcaataatagtttggatacaatcgggcatataaatgaacaaacggaaactaggtagagatgtagccaccatagca |
6904582 |
T |
|
| Q |
275 |
ag |
276 |
Q |
| |
|
|| |
|
|
| T |
6904581 |
ag |
6904580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 729
Target Start/End: Original strand, 5444354 - 5444496
Alignment:
| Q |
599 |
cttgacctagagaaaactgcatcgacattacacttgtagctc---------ggtttcttccatatgtgattgacaac---atgttgctgtgccgctgcat |
686 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| ||| |||| |
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|
| T |
5444354 |
cttgacatggagaaagctgcatcgacattacacttgtagctccttgcattcggtttcttccatctgtgattgacaactttctgttgttgtttcgccgcat |
5444453 |
T |
|
| Q |
687 |
tatttcagcatgtctgtgcgttatgccaactcgagagtagatt |
729 |
Q |
| |
|
|||| | ||||| || |||||||||||||| ||||||||||| |
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| T |
5444454 |
tattgcgacatgtatgcgcgttatgccaacttgagagtagatt |
5444496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 729
Target Start/End: Original strand, 5453398 - 5453540
Alignment:
| Q |
599 |
cttgacctagagaaaactgcatcgacattacacttgtagctc---------ggtttcttccatatgtgattgacaac---atgttgctgtgccgctgcat |
686 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| ||| |||| |
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|
| T |
5453398 |
cttgacatggagaaagctgcatcgacattacacttgtagctccttgcattcggtttcttccatctgtgattgacaactttctgttgttgtttcgccgcat |
5453497 |
T |
|
| Q |
687 |
tatttcagcatgtctgtgcgttatgccaactcgagagtagatt |
729 |
Q |
| |
|
|||| | ||||| || |||||||||||||| ||||||||||| |
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|
| T |
5453498 |
tattgcgacatgtatgcgcgttatgccaacttgagagtagatt |
5453540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 743
Target Start/End: Complemental strand, 6904214 - 6904165
Alignment:
| Q |
694 |
gcatgtctgtgcgttatgccaactcgagagtagattcatactcctctcgc |
743 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6904214 |
gcatgtctgcgcgttatgccaactcgagagtagattctaacccctctcgc |
6904165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 23223136 - 23223054
Alignment:
| Q |
181 |
aactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggcc |
265 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||||||| ||||| ||| ||||||||| |||| |||||||||| |
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|
| T |
23223136 |
aactatctcatttcattat-caataagattttcgatacaatcaggcatctcaataaac-aatggaaactaggtaaagatgtggcc |
23223054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 23237217 - 23237134
Alignment:
| Q |
181 |
aactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatggaaaccaggttgagatgtggcc |
265 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||||||| ||||| |||| ||||||| |||| |||||||||| |
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|
| T |
23237217 |
aactatctcatttcattat-caataagattttcgatacaatcaggcatctcaataaacagatggaaattaggtaaagatgtggcc |
23237134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 492 - 585
Target Start/End: Original strand, 15824570 - 15824665
Alignment:
| Q |
492 |
taaagcctctccttcatcaacttttaggatgggtgaaatccattccg--tttgctaaaacaaaacttccatgatcgtctctaatacacataccaat |
585 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||| || ||||| |||||||| || || || |||||||| |
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|
| T |
15824570 |
taaagcttctccttcatcaactttaaggatgggtgaaatccattttgtttttgctaaaacgaagcttccttgatcgtccctgatgcatataccaat |
15824665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 282 - 470
Target Start/End: Complemental strand, 6540622 - 6540440
Alignment:
| Q |
282 |
aacctcatttgtttgtatcataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagtgctccaagtttaga |
381 |
Q |
| |
|
|||||||||| |||| || ||||||| |||| ||| |||||||||||||| | || || |||||||||||| ||||| |||| |||||||| | || |
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| T |
6540622 |
aacctcatttacttgtctcctaataaactcaa-cctacaagtttttgaaaaatgtcgagaatgaatttctacactctctaataatagctccaagctccga |
6540524 |
T |
|
| Q |
382 |
ttcattcttaagactactatggaaactatcaactactactctctcgaagagtccaacttaaaagtcacattattaatatgcaaatcctt |
470 |
Q |
| |
|
||||| | || |||||||||| |||| |||||| ||| |||||| |||| ||||||| |||||||||||||||||||||| |
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|
| T |
6540523 |
ttcatctctgcgattactatggaagctattgactact-----ctcttagagtctaactcaaaagtcccattattaatatgcaaatcctt |
6540440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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