View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19913_low_10 (Length: 531)
Name: NF19913_low_10
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_10 |
 | |
|
| [»] scaffold0057 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0057 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Original strand, 58256 - 58759
Alignment:
| Q |
12 |
agagagataaactgtgtttgttattattgattgaatctctgagattacacatatttatagatgcatattagatgcataggatatgtgacaggtgtcacaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
58256 |
agagagataaactgtgtttgttattattgattgaatctctgagattacacatatttatagatgcatatttgatgcataggatatgtgacaggtgtcacaa |
58355 |
T |
|
| Q |
112 |
tctaataggcaatataagctttagttactaaacattacaagcttattctattctcccaacactatggaacattttttgatgattttgatgccaacatttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
58356 |
tctaataggcaatataagctttagttactaaacattacaagcttattctattctcccaacactatgaaacattttttgatgattttgatgccaaaatttt |
58455 |
T |
|
| Q |
212 |
atcattggagggataaccatactgatgccaatactttgtttagtttatcttcctttacttgttgcttacagttatgtttaatcttttctatgcaggaaag |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58456 |
atcattggagggattaccatactgatgccaatactttgtttagtttatcttcctttacctgttgcttacagttatgtttaatcttttctatgcaggaaag |
58555 |
T |
|
| Q |
312 |
aattaatcgaagctgggaatactgtaaggaatctgagccttttgatatctacaaataatacttggtcttattgtgtataggttatattttaaaatgcaat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
58556 |
aattaatcgaagctgggaatactgtaaggaatctgagccttttgatatctacaaataatacttggtcttattgtgtataggttatattttataatgcaat |
58655 |
T |
|
| Q |
412 |
gagtttaaaataggataacaataataaaacaagcttctttaaataaagaattatcttatatattcctgtttccagatcaaaattgttatttgaggtagct |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58656 |
gagtttaaaataggataacaataataaaacaagcttctttaaataaagaattatcttatatattcctgtttccagatcaaaattgttatttgaggtagct |
58755 |
T |
|
| Q |
512 |
gctg |
515 |
Q |
| |
|
|||| |
|
|
| T |
58756 |
gctg |
58759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 182 - 451
Target Start/End: Original strand, 33096 - 33366
Alignment:
| Q |
182 |
attttttgatgattttgatgccaacattttatcattggagggataaccatactgatgccaatactttgtttagtttatcttcctttacttgttgcttaca |
281 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
33096 |
attttttgatgattttgatgccaaaaatttatcattggagggataaccatactgatgccaatactttgtttagtttatcttcttttatttgttgcttaca |
33195 |
T |
|
| Q |
282 |
gttatgtttaatcttttctatgcaggaaagaattaatcgaagctgggaatactgtaaggaatctgagccttttgatatctacaaataatac-ttggtctt |
380 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
33196 |
gttatgtttaaccttttctatgcaggaaagaattaatcgaagctgggaataatgtaaggaatctgagccttttgatatctacaaattatactttggtctc |
33295 |
T |
|
| Q |
381 |
attgtgtataggttatattttaaaatgcaatgagtttaaaataggataacaataataaaacaagcttcttt |
451 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
33296 |
attgtgtattggttatattttagaaggcaatgagtttaaaataggataaaaataataaaacaagctgcttt |
33366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 53342 - 53505
Alignment:
| Q |
14 |
agagataaactgtgtttgttattattgattgaatctc-tgagattacacatatttatagatgcatattagatgcataggata----tgtgacaggtgtca |
108 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
53342 |
agagataaattgtgtttgttattattaattgaatctcctgagattatacatatttatagatgcataatagatgcataggatagatatgtgacaggtgtca |
53441 |
T |
|
| Q |
109 |
caatctaataggcaatataagctttagttactaaacattacaagcttattctattctcccaaca |
172 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53442 |
caatctaataggcaatataaactttagttactaaacattacaagcttattctattctcctaaca |
53505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 434 - 515
Target Start/End: Original strand, 33382 - 33463
Alignment:
| Q |
434 |
aataaaacaagcttctttaaataaagaattatcttatatattcctgtttccagatcaaaattgttatttgaggtagctgctg |
515 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33382 |
aataaaacaagccgctttaaataaataattaccttatatattcctgtttccagatcaaaattgttatttaaggtagctgctg |
33463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 35015332 - 35015223
Alignment:
| Q |
12 |
agagagataaactgtgtttgttattattgattgaatctctgagattacacatatttatagatgcatattagatgcataggatatgtgacaggtgtcacaa |
111 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || || |||||||| ||||||| ||| |
|
|
| T |
35015332 |
agagagagaaactgagtttgttattattgattgaatctctgagattacacatatttatagaagcatattgaatacacagaatatgtgataggtgtcgcaa |
35015233 |
T |
|
| Q |
112 |
tctaataggc |
121 |
Q |
| |
|
|||||||||| |
|
|
| T |
35015232 |
tctaataggc |
35015223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 14131123 - 14131084
Alignment:
| Q |
127 |
aagctttagttactaaacattacaagcttattctattctc |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14131123 |
aagctttagttactaaacattacaagcttattctgttctc |
14131084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University