View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_100 (Length: 228)

Name: NF19913_low_100
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_100
NF19913_low_100
[»] chr1 (2 HSPs)
chr1 (1-197)||(46883500-46883696)
chr1 (1-211)||(44307023-44307231)
[»] chr4 (1 HSPs)
chr4 (1-211)||(13892715-13892922)
[»] chr2 (1 HSPs)
chr2 (41-211)||(6051714-6051882)
[»] chr3 (1 HSPs)
chr3 (48-140)||(15761377-15761466)
[»] chr8 (3 HSPs)
chr8 (1-129)||(32711770-32711895)
chr8 (1-128)||(10644067-10644191)
chr8 (1-117)||(17507002-17507115)
[»] chr6 (1 HSPs)
chr6 (1-128)||(21506040-21506164)
[»] chr5 (1 HSPs)
chr5 (89-140)||(33319728-33319779)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 46883500 - 46883696
Alignment:
Q  1 aagtgtttggttagttgtttaattcttgcgaacnnnnnnnaaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaa 100  Q
    ||||||||||||||||||||||||| |||||||       |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |    
T  46883500 aagtgtttggttagttgtttaattcctgcgaactttttttaaaataattccaaggaataagtgaaatatgtttggtttgagaggtagaagaatcctggga 46883599  T
Q  101 atgaacattataattacataaatacccctattgtaaaaacattacaaaatctaagcattgcactatcatttcaatcatcaaggaaattaccttcatt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46883600 atgaacattataattacataaatacccctattgtaaaaacattacaaaatctaagcattgcactatcatttcaatcatcaaggaaattaccttcatt 46883696  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 44307231 - 44307023
Alignment:
Q  1 aagtgtttggttagttgtttaattcttgcgaacnnnnnnnaaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaa 100  Q
    ||||||||||||| ||||||||||| || ||||       |||||||||||||||| ||||||||||||| || |||||||| ||||||   || ||  |    
T  44307231 aagtgtttggttaattgtttaattcctgggaactttttttaaaataattccaaggaataagtgaaatatggttggtttgagatgtagaa---tcatgaga 44307135  T
Q  101 atgaacattataattacataaatacccctattgtaaaaacattacaaaa-tctaagcattgcactatcatttcaatcatcaaggaaattaccttcattca 199  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||     
T  44307134 atgaacattataattacataaatacccctattgtaaaaaacttaaaaaaatctaagcattgcactatcatttcaatcatcaaggaaattacattcgttct 44307035  T
Q  200 cattgcatttac 211  Q
    ||||||||||||    
T  44307034 cattgcatttac 44307023  T

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Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13892715 - 13892922
Alignment:
Q  1 aagtgtttggttagttgtttaattcttgcgaacnnnnnnnaaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaa 100  Q
    ||||||||||||| ||||||||||| ||  |||       |||||||||||||||| ||||||||||||| || |||||||| ||||||   |||| | |    
T  13892715 aagtgtttggttaattgtttaattcctggaaactttttttaaaataattccaaggaataagtgaaatatggttggtttgagatgtagaa---tcctagga 13892811  T
Q  101 atgaacattataattacataaatacccctattgtaaaaacattacaaaatctaagcattgcactatcatttcaatcatcaaggaaattaccttcattcac 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13892812 atgaacattataattacataaatacccctattgtaaaaactttaaaaaatctaagcattgcactatcatttcaatcatcaaggaaattaccttcattctc 13892911  T
Q  201 attgcatttac 211  Q
    |||||||||||    
T  13892912 attgcatttac 13892922  T

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Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 6051882 - 6051714
Alignment:
Q  41 aaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaaatgaacattataattacataaatacccctattgtaaaaac 140  Q
    |||||||||||||||| ||||||||||||| || |||||||| ||||||   |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  6051882 aaaataattccaaggaataagtgaaatatggttggtttgagatgtagaa---tcctgggaatgaacattataattacataagtacccctattgtaaaaac 6051786  T
Q  141 attacaaaa-tctaagcattgcactatcatttcaatcatcaaggaaattaccttcattcacattgcatttac 211  Q
     ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6051785 tttaaaaaaatctaagcactgcactatcatttcaatcatcaaggaaattaccttcattctcattgcatttac 6051714  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 15761377 - 15761466
Alignment:
Q  48 ttccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaaatgaacattataattacataaatacccctattgtaaaaac 140  Q
    |||||| || ||||| ||||||||||||||||||| ||||||   ||||   ||| |||||| ||||||||||||| ||||||||||| ||||    
T  15761377 ttccaaagaataagtaaaatatgtttagtttgagatgtagaa---tcctaagaataaacattgtaattacataaatgcccctattgtataaac 15761466  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32711770 - 32711895
Alignment:
Q  1 aagtgtttggttagttgtttaattcttgcgaacnnnnnnnaaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaa 100  Q
    ||||||||||||| ||||||||||| || ||||       |||||||||||| |||   ||| ||||| |||| ||||| || ||   |||||||||| |    
T  32711770 aagtgtttggttaattgtttaattcctgggaactttttttaaaataattccagggaacgagtaaaataggtttggtttgcgatgt---agaatcctggga 32711866  T
Q  101 atgaacattataattacataaatacccct 129  Q
    |||||||||||||||||| |||| |||||    
T  32711867 atgaacattataattacacaaatgcccct 32711895  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 10644191 - 10644067
Alignment:
Q  1 aagtgtttggttagttgtttaattcttgcgaacnnnnnnnaaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaa 100  Q
    ||||||||||||| ||||||||||  || ||||       |||||||||||| |||  |||| ||||| |||| ||||| || ||||||   |||||| |    
T  10644191 aagtgtttggttaattgtttaatttctgggaactttttttaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaa---tcctggga 10644095  T
Q  101 atgaacattataattacataaatacccc 128  Q
    |||||||||||||||||| |||| ||||    
T  10644094 atgaacattataattacacaaatgcccc 10644067  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 17507002 - 17507115
Alignment:
Q  1 aagtgtttggttagttgtttaattcttgcgaacnnnnnnnaaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaa 100  Q
    ||||||||||||| ||||||||||| || ||||       |||||||||||| |||  |||| ||||| |||| ||||  || ||   |||||||||| |    
T  17507002 aagtgtttggttaattgtttaattcctgggaactttttttaaaataattccacggaacaagtaaaataggtttggtttccgatgt---agaatcctggga 17507098  T
Q  101 atgaacattataattac 117  Q
    |||||||||||||||||    
T  17507099 atgaacattataattac 17507115  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21506164 - 21506040
Alignment:
Q  1 aagtgtttggttagttgtttaattcttgcgaacnnnnnnnaaaataattccaaggagtaagtgaaatatgtttagtttgagaggtagaagaatcctggaa 100  Q
    ||||||||||||| ||||| ||||| || ||||       |||||||||||| |||  |||| ||||| |||| ||||| || ||||||   |||||| |    
T  21506164 aagtgtttggttaattgttgaattcctgggaactttttttaaaataattccagggaacaagtaaaatacgtttggtttgcgatgtagaa---tcctggga 21506068  T
Q  101 atgaacattataattacataaatacccc 128  Q
    |||||||||||||||||| |||| ||||    
T  21506067 atgaacattataattacacaaatgcccc 21506040  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 33319728 - 33319779
Alignment:
Q  89 agaatcctggaaatgaacattataattacataaatacccctattgtaaaaac 140  Q
    |||||||||  |||||||||||||| |||| |||||||||||||||| ||||    
T  33319728 agaatcctgcgaatgaacattataagtacacaaatacccctattgtataaac 33319779  T

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