View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_105 (Length: 226)
Name: NF19913_low_105
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_105 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 225453 - 225672
Alignment:
| Q |
1 |
cagaaattaactattaagctgcttttggcaatgaacattggatcatttggtttgatccttttggtgaccaagtacgcggtgcatggtccgattcgtgtcc |
100 |
Q |
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| T |
225453 |
cagaaattaactattaagctgcttttggcaatgaacattggatcatttggtttgatccttttggtgaccaagtacgcggtgcatggtccgattcgtgtcc |
225552 |
T |
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| Q |
101 |
aagttcttggatggatttgtgtttctatatcagtcagtgtttttgcagcaccactaaccattgtggcacaagttgtacggacaaagagtgttgagtttat |
200 |
Q |
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| T |
225553 |
aagttcttggatggatttgtgtttctatatcagtcagtgtttttgcagcaccactaaccattgtggcacaagttgtacggacaaagagtgttgagtttat |
225652 |
T |
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| Q |
201 |
gcctttcaatttgtcattca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
225653 |
gcctttcaatttgtcattca |
225672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 239511 - 239598
Alignment:
| Q |
79 |
gtgcatggtccgattcgtgtccaagttcttggatggatttgtgtttctatatcagtcagtgtttttgcagcaccactaaccattgtgg |
166 |
Q |
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| T |
239511 |
gtgcatggtccacttcgtgtccaagttcttggatgggtttgtgtttcccttagtgttagtgtctttgcagcaccactaagcattgtgg |
239598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 239698 - 239749
Alignment:
| Q |
169 |
caagttgtacggacaaagagtgttgagtttatgcctttcaatttgtcattca |
220 |
Q |
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| T |
239698 |
caagttgttcgtacaaagagtgttgaatttatgcctttcaatttgtcattca |
239749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 1185348 - 1185276
Alignment:
| Q |
94 |
cgtgtccaagttcttggatggatttgtgtttctatatcagtcagtgtttttgcagcaccactaaccattgtgg |
166 |
Q |
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||||| ||||| ||||||||||||||| || |||||| | ||||| |||||||||||| ||| |||||||| |
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| T |
1185348 |
cgtgttcaagtccttggatggatttgtacatccatatcaattagtgtctttgcagcaccattaagcattgtgg |
1185276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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