View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_106 (Length: 225)

Name: NF19913_low_106
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_106
NF19913_low_106
[»] chr4 (3 HSPs)
chr4 (24-208)||(6612609-6612792)
chr4 (93-203)||(27015110-27015220)
chr4 (105-208)||(42329360-42329463)
[»] chr5 (1 HSPs)
chr5 (28-208)||(22790094-22790273)
[»] scaffold0381 (1 HSPs)
scaffold0381 (93-203)||(4563-4673)
[»] chr3 (1 HSPs)
chr3 (93-203)||(12530202-12530312)
[»] chr8 (1 HSPs)
chr8 (92-208)||(43222040-43222156)
[»] chr1 (2 HSPs)
chr1 (108-201)||(41327550-41327643)
chr1 (108-201)||(41337782-41337874)
[»] chr7 (1 HSPs)
chr7 (92-208)||(8866223-8866339)
[»] chr2 (1 HSPs)
chr2 (92-202)||(45009939-45010048)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 6612609 - 6612792
Alignment:
Q  24 ctgtccatactatgatcagatcatgtcttgcctatgccaatacatcagacatggtttagtgtccaacaaatgagtgttatcagttggaattgccgaggtt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  6612609 ctgtccatactatgatcagatcatgtcttgcctatgccaatacatcagacatggtttagtgtccaacaaatgagtgttatcggttggaattgccgagg-t 6612707  T
Q  124 tgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagt 208  Q
    ||||||||| ||||||||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  6612708 tgggtagcccgagcgcaactcctgatttaaaatatctccttcagcacttcaatccggacgtactcttcttaagtgagacactagt 6612792  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 27015220 - 27015110
Alignment:
Q  93 atgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttct 192  Q
    ||||||||||| |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| |    
T  27015220 atgagtgttattagttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttt 27015121  T
Q  193 taagtgagaca 203  Q
    |||||||||||    
T  27015120 taagtgagaca 27015110  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 42329360 - 42329463
Alignment:
Q  105 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 204  Q
    |||||||||||| | ||||||||||||| ||  |||| ||  |||||||| || || ||||| ||||||||||||||| |  | || ||||||||||||     
T  42329360 agttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacctagttcggcacttcaatccggacctcttatttttaagtgagacat 42329459  T
Q  205 tagt 208  Q
    ||||    
T  42329460 tagt 42329463  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 22790273 - 22790094
Alignment:
Q  28 ccatactatgatcagatcatgtcttgcctatgccaatacatcagacatggtttagtgtccaacaaatgagtgttatcagttggaattgccgaggtttggg 127  Q
    |||||||||||||| ||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||| ||    
T  22790273 ccatactatgatcatatcatgtcttgcctacgccattgcatcagacatg-tttagtgtccaacaaatgagtgttatcggttggaattgcaggggtttagg 22790175  T
Q  128 tagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagt 208  Q
    ||||| ||| |||| |  ||||||||| || || ||||| |||||||||||||   || | ||||||||||||||| ||||    
T  22790174 tagcccgagtgcaatttctgatttaaagtacctagttcggcacttcaatccggttctattattcttaagtgagacattagt 22790094  T

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Target: scaffold0381 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 4563 - 4673
Alignment:
Q  93 atgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttct 192  Q
    ||||||||||| |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| |    
T  4563 atgagtgttattagttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttt 4662  T
Q  193 taagtgagaca 203  Q
    |||||||||||    
T  4663 taagtgagaca 4673  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 12530312 - 12530202
Alignment:
Q  93 atgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttct 192  Q
    ||||||||||| |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||||||||||| |    
T  12530312 atgagtgttattagttggaactgccggggattaggaagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacgtactctttt 12530213  T
Q  193 taagtgagaca 203  Q
    ||||| |||||    
T  12530212 taagtcagaca 12530202  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 43222156 - 43222040
Alignment:
Q  92 aatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttc 191  Q
    ||||||| |||| ||||||||||| || || |||||||  | ||||| || | ||||||||||||||||||||||  ||| ||||||||   | || |||    
T  43222156 aatgagtattattagttggaattgtcggggattgggtaatccgagcgtaatttttgatttaaaatatctcgttcggtactacaatccggctatccttttc 43222057  T
Q  192 ttaagtgagacactagt 208  Q
    ||| |||||||||||||    
T  43222056 ttatgtgagacactagt 43222040  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 41327550 - 41327643
Alignment:
Q  108 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgaga 201  Q
    ||||||||||| ||||| ||||||  |||||||| |  |||  ||||||| || ||||  ||||||||||||||| | ||||||||||||||||    
T  41327550 tggaattgccggggtttaggtagctcgagcgcaattgctgacctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgaga 41327643  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 41337782 - 41337874
Alignment:
Q  108 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgaga 201  Q
    |||||||||| |||||| ||||||  |||||||| |  |||  ||||||| || ||||  ||||||||||||||| | ||||||||||||||||    
T  41337782 tggaattgcc-aggtttaggtagctcgagcgcaattgctgacctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgaga 41337874  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 8866339 - 8866223
Alignment:
Q  92 aatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttc 191  Q
    ||||||| | |||||||||||||| || || || |||||||  | ||||| ||  || || ||||| || ||||| |||||||||| |||| |||| ||     
T  8866339 aatgagtttgatcagttggaattgtcggggcttaggtagccctaacgcaattccggacttgaaatacctggttcggcacttcaatcaggacctactattt 8866240  T
Q  192 ttaagtgagacactagt 208  Q
    |||||||||||||||||    
T  8866239 ttaagtgagacactagt 8866223  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 45009939 - 45010048
Alignment:
Q  92 aatgagtgttatcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttc 191  Q
    ||||||| | || ||||||||||| || ||||| ||||||| |||||||| ||  || || ||||| ||  |||| ||||| ||||||||| | ||||||    
T  45009939 aatgagtctgataagttggaattgtcg-ggtttaggtagcccgagcgcaattcccgacttgaaatacctaattcggcactttaatccggacatcctcttc 45010037  T
Q  192 ttaagtgagac 202  Q
    |||||||||||    
T  45010038 ttaagtgagac 45010048  T

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