View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_11 (Length: 518)
Name: NF19913_low_11
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 7491279 - 7490770
Alignment:
| Q |
1 |
aaaagaggtaaaactgcatttttatgaccgtgttcagtttagttcatgttgtagcagtttagattgtaaatgtgaaagctggtgtagttttcataatcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
7491279 |
aaaagaggtaaaactgcatttttatgaccgtgttcagtttagttcatgctgtagcagtttagattgtaaatgtgaaagctggtgcagatttcataatcca |
7491180 |
T |
|
| Q |
101 |
ctagtagccttgttctctaatagttttcaaagactgcttcatctagaattatttcttactgatataactcttgaaacttaggttacgaaaagggcatgca |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
7491179 |
ctattagccttgttctctaatagttttcaaagactgcttcatctagaattatttcttactgataagactcttgaaacttaggttccgaaaagggcatgca |
7491080 |
T |
|
| Q |
201 |
aatctgttaaattttaacaagtcttgcttgtttttgttatgccctgaggttgtaggactttatttttgtaactatgactcttcccctagtaattcatttt |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7491079 |
aatgtgttaaattttaacaagtcttgcttgtttttgttatgctctgagcttgtaggactttattttagtaactatgactcttcccctagtaattcatttt |
7490980 |
T |
|
| Q |
301 |
ttgctgctataaatgattaattttaggggaacattgatgtaagtggccactgtaatcgtagtaagcactatataggatcatgagttgattcaacttttat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
7490979 |
ttgctgctataaatgattaattttaggggaacattgatgtaggtggccactataattgtagtaagcactatataggatcattacttgattaaacttttat |
7490880 |
T |
|
| Q |
401 |
gtctcttctgatctaaagtcctataactcatttaacagatgtgaagtataaattgtactttaatattgctaa-------cttgtttgtttttatttccag |
493 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
7490879 |
gtctcttctgatctaaattcctataactcatttaacagatgtgaagtataaattgtactttaatattgctaaccaatgtcttatttgtttttatttccag |
7490780 |
T |
|
| Q |
494 |
ccagcaaatt |
503 |
Q |
| |
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|||||||||| |
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| T |
7490779 |
ccagcaaatt |
7490770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 318
Target Start/End: Complemental strand, 48872134 - 48871927
Alignment:
| Q |
121 |
tagttttcaaagactgcttcatctagaattatttcttact-------gatataactcttgaaacttaggttacgaaaagggcatgcaaatctgttaaatt |
213 |
Q |
| |
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||||||| || ||||||||| ||||||||||| ||||||| ||||| |||||| ||||||||||| ||||| || |||| || ||||| ||| |
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| T |
48872134 |
tagtttttaacgactgcttcctctagaattatatcttacttcttgctgatatgactcttcaaacttaggttcagaaaaaggaatgccgatgtgttagatt |
48872035 |
T |
|
| Q |
214 |
ttaacaagt----cttgcttgtttttgttatgccctgaggttgtaggactttatttttgtaactatgactcttcccctagtaattcattttttgctgcta |
309 |
Q |
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||||||| ||| ||||||||||||||||||||| ||||||| |||| ||| | |||| ||||||||||||| |||||| |||||||| ||||| |
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| T |
48872034 |
ttaacaaaaaaaactttattgtttttgttatgccctgagcttgtagggctttttttat-taacaatgactcttccccgcgtaattaattttttgatgcta |
48871936 |
T |
|
| Q |
310 |
taaatgatt |
318 |
Q |
| |
|
||||||||| |
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|
| T |
48871935 |
taaatgatt |
48871927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 318
Target Start/End: Complemental strand, 48877438 - 48877231
Alignment:
| Q |
121 |
tagttttcaaagactgcttcatctagaattatttcttact-------gatataactcttgaaacttaggttacgaaaagggcatgcaaatctgttaaatt |
213 |
Q |
| |
|
||||||| || ||||||||| ||||||||||| ||||||| ||||| |||||| ||||||||||| ||||| || |||| || ||||| ||| |
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| T |
48877438 |
tagtttttaacgactgcttcctctagaattatatcttacttcttgctgatatgactcttcaaacttaggttcagaaaaaggaatgccgatgtgttagatt |
48877339 |
T |
|
| Q |
214 |
ttaacaagt----cttgcttgtttttgttatgccctgaggttgtaggactttatttttgtaactatgactcttcccctagtaattcattttttgctgcta |
309 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||| |||| ||| | |||| ||||||||||||| |||||| |||||||| ||||| |
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| T |
48877338 |
ttaacaaaaaaaactttattgtttttgttatgccctgagcttgtagggctttttttat-taacaatgactcttccccgcgtaattaattttttgatgcta |
48877240 |
T |
|
| Q |
310 |
taaatgatt |
318 |
Q |
| |
|
||||||||| |
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|
| T |
48877239 |
taaatgatt |
48877231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 48887710 - 48887621
Alignment:
| Q |
227 |
cttgtttttgttatgccctgaggttgtaggactttatttttgtaactatgactcttcccctagtaattcattttttgctgctataaatgatt |
318 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||| |||||||||| |||||| |||||| |||||| |||||||| |||||||||||||| |
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| T |
48887710 |
cttgtttttgttataccctgagcttgtagggcttt-tttttgtaacaatgacttttcccc-cgtaattaattttttgatgctataaatgatt |
48887621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 48872272 - 48872201
Alignment:
| Q |
31 |
tgttcagtttagttcatgttgtagcagtttagattgtaaatgtgaaagctggtgtagttttcataatccact |
102 |
Q |
| |
|
|||| |||| |||||||| |||||||||| || ||| |||||||||||||| || ||||||||||| ||||| |
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|
| T |
48872272 |
tgtttagttcagttcatgctgtagcagttcagtttgaaaatgtgaaagctgatgcagttttcataaaccact |
48872201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 48877576 - 48877505
Alignment:
| Q |
31 |
tgttcagtttagttcatgttgtagcagtttagattgtaaatgtgaaagctggtgtagttttcataatccact |
102 |
Q |
| |
|
|||| |||| |||||||| |||||||||| || ||| |||||||||||||| || ||||||||||| ||||| |
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| T |
48877576 |
tgtttagttcagttcatgctgtagcagttcagtttgaaaatgtgaaagctgatgcagttttcataaaccact |
48877505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 48872435 - 48872387
Alignment:
| Q |
277 |
actcttcccctagtaattcattttttgctgctataaatgattaatttta |
325 |
Q |
| |
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||||||| ||| ||| | ||||||||||||||||||||||||| ||||| |
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| T |
48872435 |
actcttcacctggtattacattttttgctgctataaatgattactttta |
48872387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 48877739 - 48877691
Alignment:
| Q |
277 |
actcttcccctagtaattcattttttgctgctataaatgattaatttta |
325 |
Q |
| |
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||||||| ||| ||| | ||||||||||||||||||||||||| ||||| |
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|
| T |
48877739 |
actcttcacctggtattacattttttgctgctataaatgattactttta |
48877691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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