View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_111 (Length: 215)
Name: NF19913_low_111
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_111 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 24186595 - 24186474
Alignment:
| Q |
32 |
aaaaattaggtacatgtacgcatcaattcaaaaca-gcttaaacttgaaataaagattatcatggttataaatcatttatagttgacacaagtaaatcgt |
130 |
Q |
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| T |
24186595 |
aaaaattaggtacatgtacacatcaattcaaaacaagcttaaacttgaaccaaagaatatcatggttataaatcatttatagttgacacaagtaaatcat |
24186496 |
T |
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| Q |
131 |
atataataatgagaagtaagtt |
152 |
Q |
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| T |
24186495 |
atataataatgagaagtaagtt |
24186474 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 24186461 - 24186404
Alignment:
| Q |
135 |
aataatgagaagtaagttgaaattg----atagaatctgcatgtcgacacatatctaa |
188 |
Q |
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| T |
24186461 |
aataatgagaagtaagttgaaattgatatatagaacctgcatgtcgacatatatctaa |
24186404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 25640991 - 25641059
Alignment:
| Q |
97 |
tataaatcatttatagttgacacaagtaaatcgtatataataatgagaagtaagttgaaattgatagaa |
165 |
Q |
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| T |
25640991 |
tatacatcgtttataattgacacaagtatatcatatttaataatgataagtaagaagaaatagatagaa |
25641059 |
T |
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