View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_113 (Length: 205)
Name: NF19913_low_113
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_113 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 47818533 - 47818718
Alignment:
| Q |
1 |
atgaagcttttaatttgactattgttagtgataggctagttgaagaatttcaatttttagtgacagcccaacattacaaagattttttagtgctaggcgt |
100 |
Q |
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| T |
47818533 |
atgaagcttttaatttgactattgttagtgataggctagttgaagaatttcaatttttagtgacagcccaacattacaaagattttttagtgctaggcgt |
47818632 |
T |
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| Q |
101 |
ttggttgtctaacatttatgtattgcctaaggtagtcagtaatctatctatctatctatttttatttaaactttagctgttcccct |
186 |
Q |
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| T |
47818633 |
ttggttgtctaacatttatgtattgcctaaggtagtcagtaatctatctatctatctatttttatttaaactttagctgttcccct |
47818718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 47383607 - 47383744
Alignment:
| Q |
37 |
tagttgaagaatttcaatttttagtgacagcccaacattacaaagattttttagtgctaggcgtttggttgtctaacatttatgtattgcctaaggtagt |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
47383607 |
tagttgaagaatttcaatttttagtgacagcccaacatttcaaagattttttagtgctaggcgtttggttgtctcacatttatgtattgcctaagggagt |
47383706 |
T |
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| Q |
137 |
cagtaatctatctatctatctatttttatttaaactttag |
176 |
Q |
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| T |
47383707 |
ctgt--tctatctatctatctatttttatttaaactttag |
47383744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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