View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_12 (Length: 499)

Name: NF19913_low_12
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_12
NF19913_low_12
[»] chr4 (2 HSPs)
chr4 (13-405)||(53687445-53687843)
chr4 (275-345)||(9041879-9041950)
[»] chr8 (3 HSPs)
chr8 (58-213)||(24994119-24994266)
chr8 (271-346)||(44006386-44006462)
chr8 (304-360)||(17773009-17773065)
[»] chr7 (4 HSPs)
chr7 (275-359)||(4996424-4996508)
chr7 (276-348)||(33223193-33223266)
chr7 (269-348)||(4997145-4997225)
chr7 (330-370)||(4997093-4997133)
[»] chr6 (4 HSPs)
chr6 (269-348)||(19802534-19802614)
chr6 (278-348)||(19803223-19803295)
chr6 (175-215)||(30746744-30746784)
chr6 (175-215)||(30747501-30747541)
[»] chr5 (1 HSPs)
chr5 (49-97)||(22817478-22817526)
[»] chr3 (2 HSPs)
chr3 (276-348)||(22239231-22239304)
chr3 (333-369)||(11269135-11269171)
[»] chr1 (7 HSPs)
chr1 (175-215)||(5770715-5770755)
chr1 (178-208)||(37708004-37708034)
chr1 (328-361)||(20807626-20807659)
chr1 (269-325)||(31868335-31868392)
chr1 (184-221)||(45886864-45886901)
chr1 (175-215)||(5766976-5767016)
chr1 (304-360)||(19445000-19445056)
[»] chr2 (1 HSPs)
chr2 (281-372)||(40658260-40658352)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 53687445 - 53687843
Alignment:
Q  13 aatatgaataacaatttgccaaaattgcatctccaatgctggtgctgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53687445 aatatgaataacaatttgccaaaattgcatctccaatgctggtgctgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagta 53687544  T
Q  113 tgctattgctagctgctgtcaagaattgaactggcgtgagttaagtcacgtc-ggatttggtcatttcagttgggcgcgagtgttttgtgctgggtaaag 211  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  53687545 tgctattgctagctgcggccaagaattgaactggcgtgagttaagtcacgtcggggtttggtcatttcagttgggcgcgagtgttttgtgctgggtaaag 53687644  T
Q  212 agcaagattcnnnnnnnaaaattgcataaaaat-ggtccaactttggacaagtcaatgaaattacttttctgacattcaaaacgtcatgttga-acataa 309  Q
    ||||||||||       |||||||||||||||| |||||||||||  |||||||||  |||||||||||||||||||||||||||||| |||| ||||||    
T  53687645 agcaagattctttttctaaaattgcataaaaatgggtccaactttaaacaagtcaagaaaattacttttctgacattcaaaacgtcatattgacacataa 53687744  T
Q  310 aaatgacatttttacctccggcagtagttaactaccgttccaaatatacaacac---agaaaaaattgctcgagctgtagttaacctttatatactcaa 405  Q
    |||||||||||||| |||| || |||||||||||||||| ||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||    
T  53687745 aaatgacatttttatctccagcggtagttaactaccgtttcaaatatacaacacaaaaaaaaaaattgctcgagctgtagttaacctttatatactcaa 53687843  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 9041879 - 9041950
Alignment:
Q  275 cttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactacc 345  Q
    ||||| |||||||||||||||||| |||| ||||  ||||||| |||||||||| ||| |||||||||||||    
T  9041879 cttttatgacattcaaaacgtcatattgatacatggaaatgacgtttttacctcgggcggtagttaactacc 9041950  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 213
Target Start/End: Complemental strand, 24994266 - 24994119
Alignment:
Q  58 tgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagtatgctattgctagctgctgtcaagaattgaactggcgtgagttaag 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||| ||||||||||||    
T  24994266 tgctggaggtaattttttgttctttttggcttcgacccttacctctcac------------ggctagctgctgtcaagaattgaactagcgtgagttaag 24994179  T
Q  158 tcacgtcggatt----tggtcatttcagttgggcgcgagtgttttgtgctgggtaaagag 213  Q
    ||| |||| | |    ||||||||||| |||| |||||||||||| || || ||||||||    
T  24994178 tcatgtcgaagtaaaatggtcatttcaattggacgcgagtgttttatgttgagtaaagag 24994119  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 44006386 - 44006462
Alignment:
Q  271 attacttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactaccg 346  Q
    ||||||| ||||||||||||||| |||| |||| | || |||||||| |||||| || |||| ||||||||||||||    
T  44006386 attacttctctgacattcaaaacttcatattgacatatgaaaatgacgtttttatcttcggcggtagttaactaccg 44006462  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 17773009 - 17773065
Alignment:
Q  304 acataaaaatgacatttttacctccggcagtagttaactaccgttccaaatatacaa 360  Q
    |||| |||||||| |||||||| ||  | ||||||||||||||||||| ||||||||    
T  17773009 acatgaaaatgacgtttttacccccaacggtagttaactaccgttccacatatacaa 17773065  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 4996424 - 4996508
Alignment:
Q  275 cttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactaccgttccaaatataca 359  Q
    |||||||||||||||||||||||| |||| |||| |||||||| ||||||| || ||| |||||||||||||||||||||||||||    
T  4996424 cttttctgacattcaaaacgtcatattgacacatgaaaatgacgtttttac-tctggcggtagttaactaccgttccaaatataca 4996508  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 33223266 - 33223193
Alignment:
Q  276 ttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactaccgtt 348  Q
    |||| |||||||||||||||||| |||| ||||| |||||||||||| ||||||| | ||||||||||||||||    
T  33223266 ttttttgacattcaaaacgtcatattgacacatagaaatgacattttaacctccgacggtagttaactaccgtt 33223193  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 4997225 - 4997145
Alignment:
Q  269 aaattacttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactaccgtt 348  Q
    ||||| ||||| ||||||||||||| |||| |||| ||||  ||||||| |||||||||||||| |||||||||| |||||    
T  4997225 aaattgcttttttgacattcaaaacttcatattgacacatggaaatgacgtttttacctccggcggtagttaactgccgtt 4997145  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 4997133 - 4997093
Alignment:
Q  330 gcagtagttaactaccgttccaaatatacaacacagaaaaa 370  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  4997133 gcagtagttaactaccgttccaagtatacaacacaaaaaaa 4997093  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 19802534 - 19802614
Alignment:
Q  269 aaattacttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactaccgtt 348  Q
    ||||||||||| ||||||||||||| |||| |||| |||| |||||||  |||||||||||||| ||||||||||||||||    
T  19802534 aaattacttttttgacattcaaaacatcatattgacacatgaaaatgatgtttttacctccggcggtagttaactaccgtt 19802614  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 19803295 - 19803223
Alignment:
Q  278 ttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggc-agtagttaactaccgtt 348  Q
    |||||||||||||||||| || |||| |||| |||||||| |||||||| |||||  ||||||||||||||||    
T  19803295 ttctgacattcaaaacgtaatattgacacatgaaaatgacttttttacccccggcgggtagttaactaccgtt 19803223  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 30746784 - 30746744
Alignment:
Q  175 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 215  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  30746784 atttcaattgggcgcgagcgttttgtgttgggtaaagagca 30746744  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 30747501 - 30747541
Alignment:
Q  175 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 215  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  30747501 atttcagttggtcgcgagcgttttgtgttgggtaaagagca 30747541  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 22817526 - 22817478
Alignment:
Q  49 tgctggtgctgctggaggtaattttttgttctttttggcttcgaccctt 97  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  22817526 tgctggtgctgctgctggtaattttttgttctttttggcttcgaccctt 22817478  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 22239304 - 22239231
Alignment:
Q  276 ttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactaccgtt 348  Q
    ||||||||||||||||| ||||| |||| |||| ||||||||||||||||| |  |||| ||||||||||||||    
T  22239304 ttttctgacattcaaaatgtcatattgacacatgaaaatgacatttttacccctagcagcagttaactaccgtt 22239231  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 11269171 - 11269135
Alignment:
Q  333 gtagttaactaccgttccaaatatacaacacagaaaa 369  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  11269171 gtagttaactaccgttccaagtatacaacacaaaaaa 11269135  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 5770715 - 5770755
Alignment:
Q  175 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 215  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  5770715 atttcagctgggtgcgagtgttttgtgctgggtaaagagca 5770755  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 208
Target Start/End: Complemental strand, 37708034 - 37708004
Alignment:
Q  178 tcagttgggcgcgagtgttttgtgctgggta 208  Q
    |||||||||||||||||||||||||||||||    
T  37708034 tcagttgggcgcgagtgttttgtgctgggta 37708004  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 20807659 - 20807626
Alignment:
Q  328 cggcagtagttaactaccgttccaaatatacaac 361  Q
    |||||||||||||||||||||||| |||||||||    
T  20807659 cggcagtagttaactaccgttccacatatacaac 20807626  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 31868335 - 31868392
Alignment:
Q  269 aaattacttttctgacattcaaaacgtcatgttga-acataaaaatgacatttttacc 325  Q
    ||||| ||||| ||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  31868335 aaattgcttttttgatattcaaaacgtcatgttgacacatgaaaatgacgtttttacc 31868392  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 45886901 - 45886864
Alignment:
Q  184 gggcgcgagtgttttgtgctgggtaaagagcaagattc 221  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  45886901 gggcgcgagtgttttgtgctgggtgaagagcaaaattc 45886864  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 5766976 - 5767016
Alignment:
Q  175 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 215  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  5766976 atttcagttgagcgtgagtgttttgtactgggtaaagagca 5767016  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 19445056 - 19445000
Alignment:
Q  304 acataaaaatgacatttttacctccggcagtagttaactaccgttccaaatatacaa 360  Q
    |||| |||||||| |||||||| ||  | ||||||||||||||||||| ||||||||    
T  19445056 acatgaaaatgacgtttttacccccaacggtagttaactaccgttccacatatacaa 19445000  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 40658352 - 40658260
Alignment:
Q  281 tgacattcaaaacgtcatgttga-acataaaaatgacatttttacctccggcagtagttaactaccgttccaaatatacaacacagaaaaaat 372  Q
    |||||||||||||||||| |||| ||||||||||||  |||||| ||||| | ||| | ||||||| |||||   ||||| |||| |||||||    
T  40658352 tgacattcaaaacgtcatattgacacataaaaatgatctttttatctccgaccgtaatcaactaccattccatgcatacagcacaaaaaaaat 40658260  T

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