View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_13 (Length: 478)
Name: NF19913_low_13
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 38087172 - 38087616
Alignment:
| Q |
18 |
aattagtctcccgaatcaatcggtctatagataagatattgctttttcnnnnnnngaaaatatgcatttcaataatttgtcaattgtatgctaggacaga |
117 |
Q |
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| T |
38087172 |
aattagtctcccgaatcaatcggt-tatagataagatattgctttttcaaaaaa-gaaaatatgcatttcaataatttgtcgattgtatgctaggacaga |
38087269 |
T |
|
| Q |
118 |
gttagaagggagaccaa--taagtcacaatacctgccaannnnnnnnnnnnnngttagtaatctattatattttatgtgtgaattttatatgatattgta |
215 |
Q |
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| T |
38087270 |
gttagaagggagaccaacataagtcacaatacctgccaatttttattttttttgttagtatgctattatattttatgtgtggattttatatgatattgta |
38087369 |
T |
|
| Q |
216 |
taatcggtttttacgactcaatatactaagtcttaaacacttaagttttaaggcttaattaattgcactaatctttagctnnnnnnnctgtaatattcat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
38087370 |
taatcggtttttacgactcaatatactaagtcttaaacacttaagttttaaggcttaattaattgcactaatctttaactaaaaaaactgtaatattcat |
38087469 |
T |
|
| Q |
316 |
aacaataatttcaatttatgattcctcattgcaattttactaaaaagattcaacttgttactagtgattttgttagcacactctacggtctgagctacta |
415 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
38087470 |
aacaataattccaatttatgattcctcattacaattttactaaaaagattcaacttgttactagtgattttgtttgcacactctacactctgagctacta |
38087569 |
T |
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| Q |
416 |
ccaacaattctatactcgaaatctcatcgtaaattaatcctcctatg |
462 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38087570 |
ccaacaattctatactcgaaatctcatcataaattaatcctcctatg |
38087616 |
T |
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