View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_15 (Length: 471)

Name: NF19913_low_15
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_15
NF19913_low_15
[»] chr4 (2 HSPs)
chr4 (19-464)||(3254173-3254623)
chr4 (253-297)||(3274011-3274055)
[»] chr2 (2 HSPs)
chr2 (19-87)||(43752118-43752187)
chr2 (19-87)||(3481183-3481252)
[»] chr5 (2 HSPs)
chr5 (19-86)||(79555-79623)
chr5 (392-439)||(24872946-24872993)
[»] chr1 (3 HSPs)
chr1 (19-93)||(2544641-2544716)
chr1 (19-87)||(35828721-35828790)
chr1 (19-94)||(10569231-10569307)
[»] chr7 (1 HSPs)
chr7 (19-80)||(48736077-48736139)
[»] chr6 (1 HSPs)
chr6 (380-457)||(12645266-12645343)
[»] chr3 (1 HSPs)
chr3 (19-79)||(36820140-36820201)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 3254173 - 3254623
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtagtaggagggtagatcaaatgaaggataatcaaattcttcaagatagatgaagaactag 118  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3254173 aggtggtttggacatatagtgtgaagacctatgaattatgtagtaggagggtagatcaaatgaaggataatcagattcttcaagatagatgaagaactag 3254272  T
Q  119 aaattttttaagagaaactattaggaatcactaagaggttagtgagttggaccaaaatataagttattatagaatactgtgacgttgtttgattcatata 218  Q
    |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  3254273 aaaaattttaagagaaactattaggaatcactaagagattagtgagttggaccaaaatataagttattatagaatactgtaacgttgtttgattcatgta 3254372  T
Q  219 gtcattgctatttagtagaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactctttagttttcctttctta 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254373 gtcattgctatttagtcgaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactctttagttttcctttctta 3254472  T
Q  319 aaaatatttgttagacccaagtatatatatgaaggtggcctaggaat-----------aagaaaccaacacatgtctccttgagaagctagtttgggata 407  Q
    |||||||||||||||||||||      ||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  3254473 aaaatatttgttagacccaag------tatgaaggtggcctaggaatcagaacagccagagaaaccaacacatgtctccttgagaagctagtttgggata 3254566  T
Q  408 tgtttcaatattctaataaattatgggttgatctcctctccgataagtatgatgatg 464  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3254567 tgttccaatcttctaataaattatgggttgatctcctctccgataagtatgatgatg 3254623  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 3274011 - 3274055
Alignment:
Q  253 ttgttgttgttattttgtaatttctctttcctattttttccaaca 297  Q
    ||||||||| | | ||||||||||||||||||| |||||||||||    
T  3274011 ttgttgttgatgtgttgtaatttctctttcctaatttttccaaca 3274055  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 43752187 - 43752118
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtagta-ggagggtagatcaaatgaaggata 87  Q
    ||||| ||||||||||||| | |||||||||| |||||||||||| |||| |||||||| ||| ||||||    
T  43752187 aggtgatttggacatgtagagagaagacctatagattatgtagtagggagagtagatcagatggaggata 43752118  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 3481183 - 3481252
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtag-taggagggtagatcaaatgaaggata 87  Q
    ||||||||||||||||||| | |||||||||| |||| |||||  ||||| |||||||| ||| ||||||    
T  3481183 aggtggtttggacatgtagagagaagacctatagattctgtagcaaggagagtagatcagatggaggata 3481252  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 79555 - 79623
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaatgaaggat 86  Q
    ||||||||||||||||||| | |||||||||| |||| |||||| ||||| || ||||||||| |||||    
T  79555 aggtggtttggacatgtagagagaagacctatagattctgtagtaaggagagtcgatcaaatggaggat 79623  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 24872946 - 24872993
Alignment:
Q  392 aagctagtttgggatatgtttcaatattctaataaattatgggttgat 439  Q
    ||||| |||||||||||| |||||||||| || |||||||||||||||    
T  24872946 aagcttgtttgggatatggttcaatattcaaagaaattatgggttgat 24872993  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 2544641 - 2544716
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaatgaaggataatcaaa 93  Q
    ||||||||||||||||||| | |||||||||| |||| | |||| ||||| |||||||| ||| |||||| |||||    
T  2544641 aggtggtttggacatgtagagagaagacctatagattctatagtaaggagagtagatcagatggaggatagtcaaa 2544716  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 35828790 - 35828721
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaatgaaggata 87  Q
    ||||||||||||| ||||| | |||||||||| ||||||||||| ||||| | |||||| ||| ||||||    
T  35828790 aggtggtttggacgtgtagagagaagacctatagattatgtagtaaggagagaagatcatatggaggata 35828721  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 10569307 - 10569231
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtagta-ggagggtagatcaaatgaaggataatcaaat 94  Q
    ||||||||||| ||||||| | |||||||| | |||| ||||||| ||||||||||| | ||| ||| |||||||||    
T  10569307 aggtggtttgggcatgtagagagaagacctgtagattctgtagtacggagggtagattagatggagggtaatcaaat 10569231  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 48736139 - 48736077
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtag-taggagggtagatcaaatg 80  Q
    ||||||||||  ||||||| | |||||||| |||||||||||| |||||| ||||||||||||    
T  48736139 aggtggtttgctcatgtagagcgaagacctgtggattatgtagttaggagagtagatcaaatg 48736077  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 457
Target Start/End: Complemental strand, 12645343 - 12645266
Alignment:
Q  380 tgtctccttgagaagctagtttgggatatgtttcaatattctaataaattatgggttgatctcctctccgataagtat 457  Q
    |||||||||  ||||||||||||||||||  | ||||  || || |||||||||||||||||||| || || ||||||    
T  12645343 tgtctcctttggaagctagtttgggatattgtccaatgctccaaaaaattatgggttgatctcctttctgacaagtat 12645266  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 36820201 - 36820140
Alignment:
Q  19 aggtggtttggacatgtagtgtgaagacctatggattatgtagt-aggagggtagatcaaat 79  Q
    ||||||||| ||||||||  | ||||||| || ||||||||||| |||||||||||||||||    
T  36820201 aggtggtttagacatgtaaagagaagacccatagattatgtagtaaggagggtagatcaaat 36820140  T

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