View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_17 (Length: 464)
Name: NF19913_low_17
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 232 - 454
Target Start/End: Original strand, 35472737 - 35472959
Alignment:
| Q |
232 |
taagtattgatgaacctatttcagtttttcctgcacacaacaatgaggaatctaaacattcaaatattcaacataatctgtttcgcctaatcttctaatg |
331 |
Q |
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| T |
35472737 |
taagtattgatgaacctatttcagtttttcctgcacacaacaatgaggaatctaaacattcaaatattcaacataatatgtttcgcctaatcttctaatg |
35472836 |
T |
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| Q |
332 |
atagcaatactattgatattaccagacctatatgaaaatcttttgcttatttgcactactctttatacctttatcccatgttttatcttacaaaaatctt |
431 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35472837 |
atagcaatactattgatattaccagacctatatggaaatcttttgcttatttgcactactctttatacctttatcccatgttttatcttacaaaaatctt |
35472936 |
T |
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| Q |
432 |
tcatcatcctattttagtttcat |
454 |
Q |
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||||||||||||||||||||||| |
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| T |
35472937 |
tcatcatcctattttagtttcat |
35472959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 35471429 - 35471554
Alignment:
| Q |
49 |
ttaaacaagtaatagatctaaaatgcattctagagctagaaaatgtatttttcttagctataaacaaggcaccaagagttatcttttatttgctatactc |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35471429 |
ttaaacaagtaatagatctaaaatgcattctagagctagaaaatgtatttttcttagctataaacaaggcaccaagagttatcttttatttgctatactc |
35471528 |
T |
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| Q |
149 |
gtgcatatttctctcaataaatgcaa |
174 |
Q |
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| T |
35471529 |
gtgcatatttctctctataaatgcaa |
35471554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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