View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_20 (Length: 455)
Name: NF19913_low_20
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 49515754 - 49515405
Alignment:
| Q |
1 |
ccaataattgtgtcaatcgaagccaagcttgaatatggagcttctgttgtcgacttcatcatcacagaataattatgatcaatcagataatnnnnnnntt |
100 |
Q |
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| T |
49515754 |
ccaataattgtgtcaatcgaagccaagcttgaatatggagcttctgttgtcgacttcatcatcacagaataattatgatcaatcagataataaaaaaatt |
49515655 |
T |
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| Q |
101 |
gtttactggtggcacaa-ttgatatcattgagacatctgaatgactcggcaacttttcctcaagttgtgtgtcagtttgatgctcattatattatacttg |
199 |
Q |
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| T |
49515654 |
gtttaccggtggcacaaattgatatcattgagacatctgaatgactcggcaacttttcctcaagttgtgtgtcagtttgatggtcattatattatacttg |
49515555 |
T |
|
| Q |
200 |
ttgcttatatgaattatgttgttgcatacttgtcggagcagcatccaccagtccaccaaattatgttcagcctaataaggtccacatttgatatgtctaa |
299 |
Q |
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| T |
49515554 |
ttgcttatatgaattatgttgttgcatacttgtcggagcagcatccaccagtccaccaaattatgttcaccttaataaggtccacatttgatatgtccaa |
49515455 |
T |
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| Q |
300 |
tcctaataataaattttaggactttattctttatctgtacatgagtagca |
349 |
Q |
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| T |
49515454 |
tcctaataataaattttaggactttattctttatctgtacatgagtagca |
49515405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 49516911 - 49516990
Alignment:
| Q |
170 |
gtcagtttgatgctcattatattatacttgttgcttatatgaattatgttgttgcatacttgtcggagcagcatccacca |
249 |
Q |
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| T |
49516911 |
gtcagttcaatggtcattatactatactttttacctataggaattatgttgttgcatccttgctggagcagcatccacca |
49516990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 22990306 - 22990260
Alignment:
| Q |
185 |
attatattatacttgttgcttatatgaattatgttgttgcatacttg |
231 |
Q |
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| T |
22990306 |
attatattatacttgttgcctatatgagttatgttgatgcatccttg |
22990260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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