View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19913_low_21 (Length: 454)
Name: NF19913_low_21
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_21 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 28269729 - 28269287
Alignment:
| Q |
1 |
gcattaaattctcgtaaaacttatgcaaattgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28269729 |
gcattaaattctcgtaaaacttatgcaaattgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattca |
28269630 |
T |
|
| Q |
101 |
cgacaaaccggtaattgacttgtactattttgttaaggaacctaaatattattaagtaattcacgttgtgctgttactagtttaactagatttgacattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28269629 |
cgacaaaccggtaattgacttgtactattttgttaaggaacctaaatattattaagtaattcacgttgtgctattactagtttaactagatttgacattc |
28269530 |
T |
|
| Q |
201 |
cacaactcgcaggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28269529 |
cacaactcgcaggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatg |
28269430 |
T |
|
| Q |
301 |
cgcgccacataattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaaaatcaaagtgtttgtatatgcaatcacattttcttctgca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28269429 |
cgcgccacataattgtatcagcacctacatcaaaagagttggtgaagaaattggaggtaaaatcaaag----tgtatatgcaatcacattttcttctgca |
28269334 |
T |
|
| Q |
401 |
gaattaagaaacaaattatttatagttattatgtttgattcatctca |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28269333 |
gaattaagaaacaaattatttatagttattatgtttgattcatctca |
28269287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 360
Target Start/End: Original strand, 79255 - 79404
Alignment:
| Q |
211 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| |
|
|
| T |
79255 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
79354 |
T |
|
| Q |
311 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
360 |
Q |
| |
|
||||||||||||||| || |||||||||| || |||||||||||||||| |
|
|
| T |
79355 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
79404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 79078 - 79159
Alignment:
| Q |
34 |
atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat |
115 |
Q |
| |
|
||||||| || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
79078 |
atgcagggggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat |
79159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 360
Target Start/End: Complemental strand, 40887029 - 40886880
Alignment:
| Q |
211 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| |
|
|
| T |
40887029 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
40886930 |
T |
|
| Q |
311 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
360 |
Q |
| |
|
||||||||||||||| || |||||||||| || |||||||||||||||| |
|
|
| T |
40886929 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
40886880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 40887206 - 40887125
Alignment:
| Q |
34 |
atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat |
115 |
Q |
| |
|
||||||| || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
40887206 |
atgcagggggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat |
40887125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 40461782 - 40461699
Alignment:
| Q |
31 |
tgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaa |
114 |
Q |
| |
|
|||||| |||||| |||||||| || |||||||| ||||| || ||||| |||||||||||||| || || || |||||||||| |
|
|
| T |
40461782 |
tgcatgaaggtgggtatgggacacttgaggagctccttgaggtgataacatgggctcaacttggcatccatgataaaccggtaa |
40461699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University