View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_22 (Length: 453)
Name: NF19913_low_22
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 221 - 403
Target Start/End: Original strand, 26200269 - 26200452
Alignment:
| Q |
221 |
aaatatgattcaatgattacctcgctattggtacagagaatcttctcc-tttctgaaatcagcagcatccagcataaaatgaatcagaatccatgttcta |
319 |
Q |
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| T |
26200269 |
aaataagattgaatgattacctcgctattggtacagagaatgtttcccgtttctgaaatcagcagcaggcagcataaattgaatcagaatccatgttcta |
26200368 |
T |
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| Q |
320 |
cacaatggagttattattatcagtacaaggacagaaaagctgaaatgcaacaatcaatctttattacctctcgttttgggaacg |
403 |
Q |
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| T |
26200369 |
cacaatggagttattattatcagtacaaggacagaaaaggtgaaatgcaacaatcaatctttattacctctctttttgggaacg |
26200452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 26168119 - 26168223
Alignment:
| Q |
169 |
gattaaaaacatgtttaatttttcttttcacgaaaaaataattcttattataaaatatgattcaatgattacctcgctattggt--acagagaatcttct |
266 |
Q |
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| T |
26168119 |
gattaaaaacatgtttaactt--ctttttatgaaaaaataattcttattataaaatatgattgaatgattacctcgctactggtacacagagaatctttc |
26168216 |
T |
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| Q |
267 |
cctttct |
273 |
Q |
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||||||| |
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| T |
26168217 |
cctttct |
26168223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 321
Target Start/End: Original strand, 26123592 - 26123740
Alignment:
| Q |
169 |
gattaaaaacatgtttaatttttcttttcacgaaaaaataattcttattataaaatatgattcaatgattacctcgctattggt--acagagaatcttct |
266 |
Q |
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| T |
26123592 |
gattaaaaacatgtttaactttttttat---gaaaaaataattcttattataaaatacgattgaatgattacctcgctactggtacacagagaatctttc |
26123688 |
T |
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| Q |
267 |
cctttctgaaatcagcagcatccagcataaaatgaatcagaatccatgttctaca |
321 |
Q |
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| T |
26123689 |
cctttctcaattcagca--at-cagcagtagttgaatcagaatccatgttctaca |
26123740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 26165705 - 26165787
Alignment:
| Q |
86 |
ttttgtgaagtggctcaaaa-ttgatgttgttgaatcggtcaagatcacagcgagataggtgaagctagaagatgagttttat |
167 |
Q |
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| T |
26165705 |
ttttttgaagtggctaaaaaattgatgttgttcaatcggccaaaatcgcagcgagattggtgaaggtagaagatgagttttat |
26165787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Original strand, 26123877 - 26123908
Alignment:
| Q |
406 |
ttgcaaacagaagactgatcgatagaaacaat |
437 |
Q |
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| T |
26123877 |
ttgcaaacagaagactgatcgatagaaacaat |
26123908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Original strand, 26168394 - 26168425
Alignment:
| Q |
406 |
ttgcaaacagaagactgatcgatagaaacaat |
437 |
Q |
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| T |
26168394 |
ttgcaaacagaagactgatcgatagaaacaat |
26168425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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