View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_28 (Length: 427)

Name: NF19913_low_28
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_28
NF19913_low_28
[»] chr2 (9 HSPs)
chr2 (15-409)||(30395294-30395688)
chr2 (294-406)||(30384821-30384933)
chr2 (316-409)||(30437416-30437509)
chr2 (316-409)||(30469227-30469320)
chr2 (316-355)||(30476368-30476407)
chr2 (316-409)||(30425128-30425221)
chr2 (316-409)||(30431161-30431254)
chr2 (322-404)||(23783531-23783613)
chr2 (302-355)||(30484532-30484585)
[»] chr5 (1 HSPs)
chr5 (306-409)||(41627019-41627122)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 409
Target Start/End: Original strand, 30395294 - 30395688
Alignment:
Q  15 tatttaactgtctctcggtcaacaagagttgcaaaaaagagaaattcgcctcaagaaaaacttgtttaggcttgtgctactttaagcctcatagtccctg 114  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30395294 tatttaactgcctcttggtcaacaagagttgcaaaaaagagaaattcgcctcaagacaaacttgtttaggcttgtgctactttaagcctcatagtccctg 30395393  T
Q  115 tttgtctaggcttgtgcacttcttattgagtctttgggtcttctagtatacaattccggtctcaaatataaacaaaaatatatattcgtactttttcgtc 214  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30395394 tttgtctaggcttgtgcgcttcttattgagtctttgggtcttctagtatacaattccggtctcaaatataaacaaaaatatatattcgtacttttccgtc 30395493  T
Q  215 ttgaatatatgcaaatactttttggtgttaattatagtcattgtactagtttgttcttcaacaattgtaatacttactagtaacataaatctttttgtaa 314  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30395494 ttgaaaatatgcaaatactttttggtgttaattatagtcattgtactagtttgttcttcaacaattgtaatacttgctagtaacataaatctttttgtaa 30395593  T
Q  315 taggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagatatgaaacttggaaacct 409  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30395594 caggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgtgaaagatatgaaacttggaaacct 30395688  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 30384821 - 30384933
Alignment:
Q  294 gtaacataaatctttttgtaataggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagata 393  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||| |||||||||||||||||     
T  30384821 gtaacattaatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatg 30384920  T
Q  394 tgaaacttggaaa 406  Q
    |||||||||||||    
T  30384921 tgaaacttggaaa 30384933  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 30437416 - 30437509
Alignment:
Q  316 aggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagatatgaaacttggaaacct 409  Q
    ||||||| ||||||||||| ||||||||||| |||||||| |||||||| | ||||||| ||| |||| | |||||| ||||||||||||||||    
T  30437416 aggtcacgatgattttgtacgaggttcttaggttatacccaccagtaatcgaacttgctcgaagtgttcacaaagatgtgaaacttggaaacct 30437509  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 30469227 - 30469320
Alignment:
Q  316 aggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagatatgaaacttggaaacct 409  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||| |||  ||| | |||||| | ||||||||||||||    
T  30469227 aggtcaccatgattttgtatgaggttcttaggttatacccaccagtaatcgcacttgctcgaagagttcacaaagatgttaaacttggaaacct 30469320  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 30476368 - 30476407
Alignment:
Q  316 aggtcaccatgattttgtatgaggttcttagattataccc 355  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30476368 aggtcaccatgattttgtatgaggttcttagattataccc 30476407  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 30425128 - 30425221
Alignment:
Q  316 aggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagatatgaaacttggaaacct 409  Q
    ||||||| ||||||||||| ||||||||||| |||||||| |||| ||| |  |||||| ||| |||| | |||||| ||| ||||||||||||    
T  30425128 aggtcactatgattttgtacgaggttcttaggttatacccaccagcaatcgcgcttgctcgaagtgttcacaaagatgtgatacttggaaacct 30425221  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 30431161 - 30431254
Alignment:
Q  316 aggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagatatgaaacttggaaacct 409  Q
    ||||||| ||||||||||| ||||||||||| |||||||| |||| ||| |  ||| || ||| || | | |||||||||| ||||||||||||    
T  30431161 aggtcactatgattttgtacgaggttcttaggttatacccaccagaaatcgcgcttactcgaagtgatcacaaagatatgacacttggaaacct 30431254  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 23783613 - 23783531
Alignment:
Q  322 ccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagatatgaaacttgga 404  Q
    |||||||||||||||||||| | || || |||||||| ||||  ||  ||||| |||| |||||||| ||||| |||||||||    
T  23783613 ccatgattttgtatgaggttttgaggttgtaccctcctgtaaccggcgttgctcgaaaagttgagaatgatataaaacttgga 23783531  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 30484532 - 30484585
Alignment:
Q  302 aatctttttgtaataggtcaccatgattttgtatgaggttcttagattataccc 355  Q
    ||||||||||| | || | ||||||||||||||||||||||| || ||||||||    
T  30484532 aatctttttgtgacagatgaccatgattttgtatgaggttctaaggttataccc 30484585  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 409
Target Start/End: Complemental strand, 41627122 - 41627019
Alignment:
Q  306 tttttgtaataggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgagaaagatatgaaacttggaa 405  Q
    ||||||| |||||| ||||||||||||||||||||| | |||||||| |||||  |||| |  ||| |  |||| ||||| ||| || ||||||||||||    
T  41627122 tttttgtcataggttaccatgattttgtatgaggttatgagattatatcctcccataattgagctttcgcgaaacgttgaaaaaaatgtgaaacttggaa 41627023  T
Q  406 acct 409  Q
    ||||    
T  41627022 acct 41627019  T

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