View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_29 (Length: 425)
Name: NF19913_low_29
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 213160 - 212754
Alignment:
| Q |
11 |
agaaaatgagcatataaagttcaaaaacaaaaccctgtcccctaaactagtcaacttcttctcattaagcttaaacacatgaatccttacaggatcatga |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
213160 |
agaaaatgagcatataaagttcaaaaacaaaaccttgtcccctaaactagtcaacttcttctcattaagcttaaacacatgaatccttacaggatcatga |
213061 |
T |
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| Q |
111 |
tcagggaacccagtacgtatacactcataaacatctactaac-------------------ccactaagaatttcatgcctccaccatcaaccaatggtt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
213060 |
tcagggaacccagtacgtatacactcataaacatctactaacaacaaatcaccctcgctctccactaagaatttcatgcctccaccatcaaccaatggtt |
212961 |
T |
|
| Q |
192 |
cagccagccactaattggacactcgagtcatcgttattgttgaaaggatgaggttggaatgggtacttgaagggtaaggtaagatgtgatgatgatttgg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
212960 |
cagccagccactaattggacactcgagtcatcgttattgttgaaaggatgaggttggaatgggtacttgaagggtaaggtaagatgtgatgatgatttgg |
212861 |
T |
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| Q |
292 |
gacagaggaagatcgccaagtcgaacagaacagattgatcgaaagcgaatgagatcgagttcaacatcgaagcctttttgatatcagattgagaagctct |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
212860 |
gacagaggaagatcgccaagtcgaacagaacagattgatcgaaagcgaatgagatcga---------------ttttttgatatcagattgagaagctct |
212776 |
T |
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| Q |
392 |
gttggaccgccatgatcgatca |
413 |
Q |
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|||||||||||||||||||||| |
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| T |
212775 |
gttggaccgccatgatcgatca |
212754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 9170908 - 9170948
Alignment:
| Q |
68 |
cttctcattaagcttaaacacatgaatccttacaggatcat |
108 |
Q |
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| T |
9170908 |
cttctcattaagcttaaacaaatcaatccttacaggatcat |
9170948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 7029904 - 7029944
Alignment:
| Q |
68 |
cttctcattaagcttaaacacatgaatccttacaggatcat |
108 |
Q |
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|||||||||||||||||||| || |||||||||| |||||| |
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| T |
7029904 |
cttctcattaagcttaaacaaatcaatccttacacgatcat |
7029944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 7041540 - 7041572
Alignment:
| Q |
36 |
aacaaaaccctgtcccctaaactagtcaacttc |
68 |
Q |
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| T |
7041540 |
aacaaaaccctatcccctaaactagtcaacttc |
7041572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 9159520 - 9159480
Alignment:
| Q |
68 |
cttctcattaagcttaaacacatgaatccttacaggatcat |
108 |
Q |
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|||||| ||||||||||||| || ||||||||||||||||| |
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| T |
9159520 |
cttctcgttaagcttaaacaaatcaatccttacaggatcat |
9159480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 33541743 - 33541827
Alignment:
| Q |
68 |
cttctcattaagcttaaacacatgaatccttacaggatcatgatcagggaacccagtacgtatacactcataaacatctactaac |
152 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||| ||||||| || ||||| |||| ||||||||||| |||||| |
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| T |
33541743 |
cttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaac |
33541827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 18571202 - 18571254
Alignment:
| Q |
68 |
cttctcattaagcttaaacacatgaatccttacaggatcatgatcagggaacc |
120 |
Q |
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|||||||| ||||||||| | || ||||||||| ||||||||||||| ||||| |
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| T |
18571202 |
cttctcatcaagcttaaagaaatcaatccttacgggatcatgatcagagaacc |
18571254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 9449170 - 9449229
Alignment:
| Q |
327 |
tgatcgaaagcgaatgagatcgagttcaacatcgaagcctttttgatatcagattgagaag |
387 |
Q |
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| T |
9449170 |
tgatcgaaaacgaatgagatcgagttcattgtcg-agcctttgtgatatgagattgagaag |
9449229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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