View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_3 (Length: 638)

Name: NF19913_low_3
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_3
NF19913_low_3
[»] chr3 (24 HSPs)
chr3 (10-620)||(6914198-6914809)
chr3 (267-617)||(6879882-6880221)
chr3 (267-620)||(6242688-6243025)
chr3 (481-620)||(6235616-6235755)
chr3 (267-385)||(6897454-6897574)
chr3 (481-620)||(6139855-6139994)
chr3 (505-620)||(6263275-6263390)
chr3 (488-617)||(6897664-6897793)
chr3 (121-366)||(6256452-6256689)
chr3 (482-620)||(6256772-6256910)
chr3 (267-372)||(6166264-6166371)
chr3 (481-620)||(6166465-6166605)
chr3 (520-613)||(6851386-6851479)
chr3 (290-372)||(6851607-6851691)
chr3 (505-620)||(13275725-13275840)
chr3 (266-373)||(6724595-6724704)
chr3 (302-384)||(6235448-6235532)
chr3 (442-617)||(6593677-6593852)
chr3 (302-373)||(6593906-6593979)
chr3 (26-80)||(8573015-8573069)
chr3 (583-616)||(6782657-6782690)
chr3 (583-616)||(6941607-6941640)
chr3 (27-75)||(6233832-6233880)
chr3 (584-616)||(6944721-6944753)
[»] scaffold0425 (2 HSPs)
scaffold0425 (267-373)||(14038-14146)
scaffold0425 (520-617)||(13816-13912)


Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 10 - 620
Target Start/End: Original strand, 6914198 - 6914809
Alignment:
Q  10 attattctcggccaaatgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttcattagtgctgaagcagggaacttggatttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6914198 attattctcggccaaatgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttcattagtgctgaagcagggaacttggatttt 6914297  T
Q  110 atgggaaacagtcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtaaactcatatcca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6914298 atgggaaacagtcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtgaactcatatcca 6914397  T
Q  210 aatggggtgcctacaattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagcgacatccttctggttacgtgtaagagcagtggtcgtg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6914398 aatggggtgcctacaattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagtgacatccttctggttacgtgtaagagcagtggtcgtg 6914497  T
Q  310 ccattcatctggtcacgaatgggaatggatggcaccaacagcatggtttcaggtcacatgtaagctgtcagaaacagtattgcaaaatatatcagtatat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6914498 ccattcatctggtcacgaatgggaatggatggcaccaacagcatggtttcaggtcacatgtaagctgtcagaaacagtattgcaaaatatatcagtatat 6914597  T
Q  410 cacaaatacatgcactgttaagcctaaaaggctaaaacatagtatcttgtgc-ttactttactatttgagcaaaaattcactattgtttgactaaaataa 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6914598 cacaaatacatgcactgttaagcctaaaaggctaaaacatagtatcttgtgcattactttactatttgagcaaaaattcactattgtttgactaaaataa 6914697  T
Q  509 acagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6914698 acagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaac 6914797  T
Q  609 gctctccttgct 620  Q
    ||||||||||||    
T  6914798 gctctccttgct 6914809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 267 - 617
Target Start/End: Original strand, 6879882 - 6880221
Alignment:
Q  267 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtc 364  Q
    |||||| |||| ||||| |||  ||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |  || ||||||||||||||||    
T  6879882 aacagctacatacttctagttgtgtgtaagagcagtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagagcatggtttcaggtc 6879981  T
Q  365 acatgtaagctgtcagaaacagtattgcaaaatatatcagtatatcacaaata-catgcactgttaagcctaaaaggctaaaacatagtatcttgtgctt 463  Q
    |||||||||| |||||||| || ||||||| |        ||||||||||| | | ||||||||| | | ||||||        |||||||||| ||  |    
T  6879982 acatgtaagcggtcagaaagagcattgcaaca--------tatatcacaaacaccgtgcactgttcaacataaaag--------atagtatcttatgaat 6880065  T
Q  464 a--ctttactatttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctc 561  Q
    |   |||||||||| ||  |||||  |||| |||||||| |  |||||||||||    |||||||||||||||| ||||||||||||| ||||||||| |    
T  6880066 aatttttactatttaagagaaaatatactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctacaataacatctcatctcagccgc 6880165  T
Q  562 aaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctcctt 617  Q
      |||| |||||||||||   ||| ||||||| |||| ||||||||||||||||||    
T  6880166 ctatcaggaaattgtcacatcaggaatgtgactaattgtatgccaacgctctcctt 6880221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 267 - 620
Target Start/End: Original strand, 6242688 - 6243025
Alignment:
Q  267 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcaccaacag--catggtttcaggtc 364  Q
    |||||| |||| ||| |||||  |||| |||||||||||| |||||||| | |||||||||||| |||||||| ||| ||| ||  ||||||||||||||    
T  6242688 aacagcaacatacttttggttgtgtgtgagagcagtggtcatgccattcgtttggtcacgaatgagaatggatcgcaacaagagagcatggtttcaggtc 6242787  T
Q  365 acatgtaagctgtcagaaacagtattgcaaaatatatcagtatatcacaaataca-tgcactgttaagcctaaaaggctaaaacatagtatcttgtgc-t 462  Q
    |||||||||| ||||||||||  |||| || |||||||        ||||| ||| ||||||||| | | |||||        || ||||| |||||| |    
T  6242788 acatgtaagcagtcagaaacaccattgaaacatatatc--------acaaacacagtgcactgttcaacataaaa--------cacagtatgttgtgcat 6242871  T
Q  463 tacttt-actatttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctc 561  Q
    || ||| ||| ||| |   |||||  |||| |||||||| |  |||||||||||  |||||||| ||||||||| |||||||||||||     ||||| |    
T  6242872 tatttttactgtttaaaagaaaatatactaatgtttgacaactataaacagattggtgaatgtgctgcacctggctacaataacatct-----cagccgc 6242966  T
Q  562 aaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgct 620  Q
     ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  6242967 caatcaggaaattgtcacgttagggatgtgacaaattgtatgccaacgctctccttgct 6243025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 481 - 620
Target Start/End: Original strand, 6235616 - 6235755
Alignment:
Q  481 aaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacg 580  Q
    |||||| |||| |||||||| |  |||||||||||    |||||||||||||||| ||||||||||||| ||||||||  | ||||| |||||||||||     
T  6235616 aaaatttactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctacaataacatctcatctcagctgccaatcaggaaattgtcaca 6235715  T
Q  581 gaagggatgtgacaaattctatgccaacgctctccttgct 620  Q
     |||| |||||| ||||| |||||||||||||||||||||    
T  6235716 taaggaatgtgagaaattgtatgccaacgctctccttgct 6235755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 6897454 - 6897574
Alignment:
Q  267 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtc 364  Q
    |||||| |||| |||||||||  |||| |||||||||||| |||||||||| ||||||||| || |||||||||||| |  || ||||||||||||||||    
T  6897454 aacagctacatacttctggttgtgtgtgagagcagtggtcatgccattcatttggtcacgagtgagaatggatggcaacaaaagagcatggtttcaggtc 6897553  T
Q  365 acatgtaagctgtcagaaaca 385  Q
    |||||||||| ||| ||||||    
T  6897554 acatgtaagcggtctgaaaca 6897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 481 - 620
Target Start/End: Original strand, 6139855 - 6139994
Alignment:
Q  481 aaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacg 580  Q
    |||||| |||| |||||||| |  |||||||||||  ||||||| ||||||||||| | |||||||||| |||||||||   ||||| |||||||| ||     
T  6139855 aaaatttactaatgtttgacaactataaacagattggtgaatgttgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgtgaca 6139954  T
Q  581 gaagggatgtgacaaattctatgccaacgctctccttgct 620  Q
    |||||||| ||| ||||| ||||||||||||| |||||||    
T  6139955 gaagggatatgagaaattgtatgccaacgctcgccttgct 6139994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 505 - 620
Target Start/End: Original strand, 6263275 - 6263390
Alignment:
Q  505 ataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgc 604  Q
    |||||||||||  ||||||| |||||||||| ||||||||||||| ||||||||  | ||||| |||||||||||  |||| |||||| ||||| |||||    
T  6263275 ataaacagattggtgaatgttgtgcacctggctacaataacatctcatctcagctgccaatcaggaaattgtcacataaggaatgtgagaaattgtatgc 6263374  T
Q  605 caacgctctccttgct 620  Q
    |||||||| |||||||    
T  6263375 caacgctcgccttgct 6263390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 488 - 617
Target Start/End: Original strand, 6897664 - 6897793
Alignment:
Q  488 actattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaaggga 587  Q
    |||| |||||||| |  |||||||||||  |||||||||||||||||| || |||||||||| ||||||||| | ||||| |||||||||||   ||| |    
T  6897664 actaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatcaggaaattgtcacatcaggaa 6897763  T
Q  588 tgtgacaaattctatgccaacgctctcctt 617  Q
    |||||| |||| ||||||||| ||||||||    
T  6897764 tgtgactaattgtatgccaacactctcctt 6897793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 121 - 366
Target Start/End: Original strand, 6256452 - 6256689
Alignment:
Q  121 tcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtaaactcatatccaaatggggtgcc 220  Q
    ||||||||||||| ||||   |||||||| |||||||||||||||||||||||||   |||  || |||| || || ||  |||||||||||| || |||    
T  6256452 tcacaagaataacaaagagaagattatatggtgaattatattaaaaagaattacatgtgcaataaacctccgc-gtcaa--catatccaaatgcggggcc 6256548  T
Q  221 tacaattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctg 320  Q
    |||||||  |||| ||||| | |||||||| ||||||||       |||||||||||||||||||||  |  | ||||| |||||| ||||||| |||||    
T  6256549 tacaattggaccatgcatgagctttgtggaagtggaaca-------aacagcgacatccttctggttgtgcatgagagcggtggtcatgccattgatctg 6256641  T
Q  321 gtcacgaatgggaatggatggcacc--aacagcatggtttcaggtcac 366  Q
    |||| |||||  |||||||| || |  || ||||||||||||||||||    
T  6256642 gtcatgaatgataatggatgccaacaaaagagcatggtttcaggtcac 6256689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 482 - 620
Target Start/End: Original strand, 6256772 - 6256910
Alignment:
Q  482 aaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacgg 581  Q
    ||||| |||| |||||||| |  |||||||||||  ||||||| |||||||||  |||||||| |||||||||||||  | ||||| |||||| ||||      
T  6256772 aaatttactaatgtttgacaactataaacagattggtgaatgttgtgcacctgtctacaataaaatctgatctcagctgccaatcaggaaattatcacat 6256871  T
Q  582 aagggatgtgacaaattctatgccaacgctctccttgct 620  Q
    ||||||||||| ||||| |||||||| |||| |||||||    
T  6256872 aagggatgtgagaaattgtatgccaatgctcgccttgct 6256910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 267 - 372
Target Start/End: Original strand, 6166264 - 6166371
Alignment:
Q  267 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcaccaacag--catggtttcaggtc 364  Q
    |||||| ||||  ||||||||  |||| ||||| |||||| |||||||||| |||||||||||| |||||||||||| ||| ||  ||||||||||||||    
T  6166264 aacagctacatatttctggttgtgtgtgagagcggtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagatcatggtttcaggtc 6166363  T
Q  365 acatgtaa 372  Q
    ||||||||    
T  6166364 acatgtaa 6166371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 481 - 620
Target Start/End: Original strand, 6166465 - 6166605
Alignment:
Q  481 aaaattcactattgtttgactaaaat-aaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcac 579  Q
    |||||| |||| |||||||| | ||| |||||||||  |||||||||||||||||| ||||||||||||| || |||||  | ||||| |||||||||||    
T  6166465 aaaatttactaatgtttgacaacaattaaacagattggtgaatgtggtgcacctggctacaataacatctcatatcagctgccaatcaggaaattgtcac 6166564  T
Q  580 ggaagggatgtgacaaattctatgccaacgctctccttgct 620  Q
       ||| ||||||| |||| |||||| ||| ||||||||||    
T  6166565 atcaggaatgtgactaattgtatgcctacgttctccttgct 6166605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 520 - 613
Target Start/End: Complemental strand, 6851479 - 6851386
Alignment:
Q  520 aatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctct 613  Q
    |||||||||||||||| ||||||||||||| ||||||||| | ||||| |||||||||||   ||| ||||||| |||| |||||||| |||||    
T  6851479 aatgtggtgcacctggctacaataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaattgtatgccaatgctct 6851386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 6851691 - 6851607
Alignment:
Q  290 gtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtcacatgtaa 372  Q
    |||| |||| |||||| ||||||||||||||||||| |||| |||||||||||| |  || ||||||||||||||||||||||||    
T  6851691 gtgtgagaggagtggtggtgccattcatctggtcacaaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaa 6851607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 505 - 620
Target Start/End: Complemental strand, 13275840 - 13275725
Alignment:
Q  505 ataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgc 604  Q
    |||||||||||  ||||| | ||||||||||| | |||||||||| |||||||||   ||||| |||||||| || |||||||| ||| ||||| |||||    
T  13275840 ataaacagattggtgaatatcgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgtgacagaagggatatgagaaattgtatgc 13275741  T
Q  605 caacgctctccttgct 620  Q
    |||||||  |||||||    
T  13275740 caacgcttgccttgct 13275725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 6724704 - 6724595
Alignment:
Q  266 caacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcaccaaca--gcatggtttcaggt 363  Q
    |||||| | ||| |||||||||  | || |||| |||||| |||||||||||||||||||||||| || ||||||||| ||| |   |||||||||||||    
T  6724704 caacagaggcattcttctggttgtgcgtgagaggagtggttgtgccattcatctggtcacgaatgagattggatggcaacaaaatcacatggtttcaggt 6724605  T
Q  364 cacatgtaag 373  Q
    ||||||||||    
T  6724604 cacatgtaag 6724595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 6235448 - 6235532
Alignment:
Q  302 tggtcgtgccattcatctggtcacgaatgggaatggatggcaccaacagc--atggtttcaggtcacatgtaagctgtcagaaac 384  Q
    ||||| |||||||||| |||||| ||||| |||||||||||| ||| ||   | ||||||||||||||||||||| |||||||||    
T  6235448 tggtcatgccattcatttggtcatgaatgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtcagaaac 6235532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 617
Target Start/End: Complemental strand, 6593852 - 6593677
Alignment:
Q  442 taaaacatagtatcttgtgc-ttactttactatttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggataca 540  Q
    |||||||||||||||||||| ||| | ||  |||||| || |||||||| | | |||||| |  ||||||| |||  |||||| ||||||||||| ||||    
T  6593852 taaaacatagtatcttgtgcattattgtatgatttga-cagaaattcacaaatctttgacaagtataaacaaattggtgaatgcggtgcacctggctaca 6593754  T
Q  541 ataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctcctt 617  Q
    |||||| || ||| || || | ||||| |||||||| ||   ||| ||||||| |||| |||||||| |||| ||||    
T  6593753 ataacagctcatcccaaccgctaatcaggaaattgttacatcaggaatgtgactaattttatgccaatgctcgcctt 6593677  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 6593979 - 6593906
Alignment:
Q  302 tggtcgtgccattcatctggtcacgaatgggaatggatggcaccaaca--gcatggtttcaggtcacatgtaag 373  Q
    |||| |||||||||||||||||| ||||| || || ||||||  || |  ||||||||||||||||||||||||    
T  6593979 tggttgtgccattcatctggtcatgaatgagattgaatggcaaaaaaatcgcatggtttcaggtcacatgtaag 6593906  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 8573069 - 8573015
Alignment:
Q  26 tgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttca 80  Q
    |||||||||||| ||||||| |||||||||||||| |||| || |||||| ||||    
T  8573069 tgaaaattacaggaattcatgaaaagaaagaggtattggagcaaatgagctttca 8573015  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 616
Target Start/End: Complemental strand, 6782690 - 6782657
Alignment:
Q  583 agggatgtgacaaattctatgccaacgctctcct 616  Q
    |||||||||||||||| |||||||||||||||||    
T  6782690 agggatgtgacaaattgtatgccaacgctctcct 6782657  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 616
Target Start/End: Original strand, 6941607 - 6941640
Alignment:
Q  583 agggatgtgacaaattctatgccaacgctctcct 616  Q
    |||||||||||||||| |||||||||||||||||    
T  6941607 agggatgtgacaaattgtatgccaacgctctcct 6941640  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 6233832 - 6233880
Alignment:
Q  27 gaaaattacagaaattcattaaaagaaagaggtactggaccagatgagc 75  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||| ||||||    
T  6233832 gaaaattacaggaattcatgaaaagaaagatgtattggaccaaatgagc 6233880  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 616
Target Start/End: Original strand, 6944721 - 6944753
Alignment:
Q  584 gggatgtgacaaattctatgccaacgctctcct 616  Q
    ||||||||||||||| |||||||||||||||||    
T  6944721 gggatgtgacaaattgtatgccaacgctctcct 6944753  T

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Target: scaffold0425 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 14146 - 14038
Alignment:
Q  267 aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtc 364  Q
    ||||||| ||| ||||||||   |||| |||| |||||| ||||||||||| ||||||| |||| |||||||||||| |  || ||||||||||||||||    
T  14146 aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacaaatgagaatggatggcaacaaaatagcatggtttcaggtc 14047  T
Q  365 acatgtaag 373  Q
    |||||||||    
T  14046 acatgtaag 14038  T

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Target: scaffold0425; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 617
Target Start/End: Complemental strand, 13912 - 13816
Alignment:
Q  520 aatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctcctt 617  Q
    |||||||||||||||| ||||||||||||| ||||||||| | ||||| |||||||||||   | ||| ||||| |||| |||||||| |||||||||    
T  13912 aatgtggtgcacctggctacaataacatctcatctcagccgccaatcaggaaattgtcacatca-ggaagtgactaattgtatgccaatgctctcctt 13816  T

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