View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_31 (Length: 417)

Name: NF19913_low_31
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_31
NF19913_low_31
[»] scaffold1903 (2 HSPs)
scaffold1903 (192-401)||(527-731)
scaffold1903 (1-120)||(773-895)
[»] chr7 (6 HSPs)
chr7 (192-401)||(35611414-35611619)
chr7 (192-401)||(5568642-5568847)
chr7 (192-401)||(3614926-3615131)
chr7 (1-120)||(35611695-35611818)
chr7 (1-120)||(3614729-3614855)
chr7 (10-120)||(5568924-5569042)
[»] chr4 (4 HSPs)
chr4 (192-401)||(9981422-9981627)
chr4 (1-120)||(9981699-9981824)
chr4 (306-401)||(46355866-46355961)
chr4 (318-401)||(20855476-20855559)
[»] chr3 (3 HSPs)
chr3 (223-384)||(33130182-33130339)
chr3 (6-113)||(33129975-33130086)
chr3 (313-382)||(54670897-54670966)
[»] chr2 (2 HSPs)
chr2 (270-401)||(15480414-15480551)
chr2 (34-112)||(15480749-15480829)
[»] chr8 (1 HSPs)
chr8 (318-401)||(14735280-14735363)


Alignment Details
Target: scaffold1903 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 192 - 401
Target Start/End: Complemental strand, 731 - 527
Alignment:
Q  192 gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca 291  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    |||||  |||||||||||||||||||||||||    
T  731 gtatccatggatgcacaagcagatttatcaagctactatgccacctccaacaaattcatcaaat----gggtcactcactgataactctttttcattcca 636  T
Q  292 tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 391  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  635 tttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaacca-ataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 537  T
Q  392 gttgttgatg 401  Q
    ||||||||||    
T  536 gttgttgatg 527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 895 - 773
Alignment:
Q  1 ttgtacttgttcttgttattgctggttttgtatatacccataacttcaatt---aaaaacaaatccattttgttgaattggtattttttattgttgtttc 97  Q
    |||||||||||||||||||||||| ||||| | |||| |||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||     
T  895 ttgtacttgttcttgttattgctgtttttgaacatactcataacttcaattttaaaaaaaaaatccattttgttgaattggtattttttattgttgttta 796  T
Q  98 tgaaactacccattataattttg 120  Q
    |||||||||| ||||||||||||    
T  795 tgaaactacctattataattttg 773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 192 - 401
Target Start/End: Complemental strand, 35611619 - 35611414
Alignment:
Q  192 gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca 291  Q
    ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||    ||||| ||||||||||||||||||||||||||    
T  35611619 gtatccatggatgcacaagcagatttatcaagctactatgccatctccaacaaattcatcaaat----gggtcattcactgataactctttttcattcca 35611524  T
Q  292 tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 391  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  35611523 tttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaggatgaa 35611424  T
Q  392 gttgttgatg 401  Q
    ||||||||||    
T  35611423 gttgttgatg 35611414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 192 - 401
Target Start/End: Complemental strand, 5568847 - 5568642
Alignment:
Q  192 gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca 291  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||    |||||  ||||| |||||||||||||||||||    
T  5568847 gtatccatggatgcacaagcagatttatcaagctactatgccatctccaacaaactcatcaaat----gggtcactcactaataactctttttcattcca 5568752  T
Q  292 tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 391  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5568751 tttgaattcaaaatcaaacccttctctttcatggcatttactttatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 5568652  T
Q  392 gttgttgatg 401  Q
    ||||||||||    
T  5568651 gttgttgatg 5568642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 192 - 401
Target Start/End: Original strand, 3614926 - 3615131
Alignment:
Q  192 gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca 291  Q
    ||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| |    |||  |||||| |||||| |||||||||||    
T  3614926 gtatccatggatgcacaagcagatttatcaaactactatgccatctccaacaaattcatcaaatga----gtcactcactggtaactccttttcattcca 3615021  T
Q  292 tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 391  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3615022 tttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 3615121  T
Q  392 gttgttgatg 401  Q
    ||||||||||    
T  3615122 gttgttgatg 3615131  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 35611818 - 35611695
Alignment:
Q  1 ttgtacttgttcttgttattgctggttttgtatatacccataacttcaatt--aaaaacaaatccattttgttgaattg-gtatttttt-attgttgttt 96  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||| ||||  ||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  35611818 ttgtacttgttcttgttattgctgtttttgaacatacccataactttaatttaaaaaaaaaatccattttgttgaattgagtatttttttattgttgttt 35611719  T
Q  97 ctgaaactacccattataattttg 120  Q
     |||||||||||||||||||||||    
T  35611718 ttgaaactacccattataattttg 35611695  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3614729 - 3614855
Alignment:
Q  1 ttgtacttgttcttgttattgctggttttgtatatacccataacttcaattaaaaacaaat-------ccattttgttgaattggtattttttattgttg 93  Q
    |||||||||||||||||| ||||| ||||  | |||||||||||||||||| |||| ||||       |||||||| ||||||||   ||||||||||||    
T  3614729 ttgtacttgttcttgttactgctgttttttaacatacccataacttcaatttaaaaaaaataaaaaatccattttgatgaattgggtatttttattgttg 3614828  T
Q  94 tttctgaaactacccattataattttg 120  Q
    |||||||||||||||||||||||||||    
T  3614829 tttctgaaactacccattataattttg 3614855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 5569042 - 5568924
Alignment:
Q  10 ttcttgttattgctggttttgtatatacccataacttcaatt------aaaaacaaatccattttgttgaattgg-tatttttt-attgttgtttctgaa 101  Q
    |||||||||||| || ||||| | ||||||||||||||||||      ||||| ||| ||||||||||||||||| |||||||| |||||||||||||||    
T  5569042 ttcttgttattgttgtttttgaacatacccataacttcaatttttaaaaaaaaaaaacccattttgttgaattgggtatttttttattgttgtttctgaa 5568943  T
Q  102 actacccattataattttg 120  Q
    |||||||||||||||||||    
T  5568942 actacccattataattttg 5568924  T

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Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 192 - 401
Target Start/End: Complemental strand, 9981627 - 9981422
Alignment:
Q  192 gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca 291  Q
    |||| |||||||| ||||||| |||||||||||||||||| || || |||||||||||||||||    |||||  |||| ||||||||||||||||||||    
T  9981627 gtattcatggatgcacaagcacatttatcaagctactatgccatcttcaacaaattcatcaaat----gggtcactcaccgataactctttttcattcca 9981532  T
Q  292 tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa 391  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||||| ||||||    
T  9981531 tttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaatcacataaaaatgttcatgttaatctcataaaataagaacaggatgaa 9981432  T
Q  392 gttgttgatg 401  Q
    ||||||||||    
T  9981431 gttgttgatg 9981422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 9981824 - 9981699
Alignment:
Q  1 ttgtacttgttcttgttattgctggttttgtatatacccataacttcaatt-----aaaaacaaatccattttgttgaattgg-tattttttattgttgt 94  Q
    ||||||||||||||||||||| || ||||| | ||||||||||||||||||     ||||| ||||||||||||||||||||| ||||||||||||||||    
T  9981824 ttgtacttgttcttgttattgttgtttttgaacatacccataacttcaatttaaaaaaaaaaaaatccattttgttgaattgggtattttttattgttgt 9981725  T
Q  95 ttctgaaactacccattataattttg 120  Q
    |||||||||||| |||||||||||||    
T  9981724 ttctgaaactacgcattataattttg 9981699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 401
Target Start/End: Original strand, 46355866 - 46355961
Alignment:
Q  306 caaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatg 401  Q
    |||| |||||||||| ||||| ||| |||||| |||||  ||||||||||  ||||||||||||| ||||||||||| |||| | ||||||||||||    
T  46355866 caaatctttctcttttatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcgtaaaacaagaataagattaaagttgttgatg 46355961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 20855476 - 20855559
Alignment:
Q  318 tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatg 401  Q
    ||||||||| ||| |||||| |||||  ||||||||||  |||||||||||||||||||||| || |||| | ||||||||||||    
T  20855476 tttcatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcataaaacaaaaataagattaaagttgttgatg 20855559  T

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Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 33130182 - 33130339
Alignment:
Q  223 gctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttca 322  Q
    ||||| ||| || ||||||||||||||||||||    |||||  |||||||||||||||||||||||||||||||||||||| |||||| |||||||||     
T  33130182 gctaccatgccatctccaacaaattcatcaaat----gggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcc 33130277  T
Q  323 tggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaaca 384  Q
    |||| ||||||||||||||||| ||| || ||||||||| |||||||||| |||||||||||    
T  33130278 tggcgtttacttcatgaaaaaccagacaacaatgttcatcttaatctcatcaaacaagaaca 33130339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 33129975 - 33130086
Alignment:
Q  6 cttgttcttgttattgctggttttgtatatacccataacttcaatt---aaaaacaaatccattttgttgaattgg-tattttttattgttgtttctgaa 101  Q
    |||||||||||| |||||| ||||  | ||| ||||||||||||||   ||||| ||||||| ||| |||||| || ||||| |||||||||||||||||    
T  33129975 cttgttcttgttgttgctgtttttaaacatatccataacttcaatttaaaaaaaaaaatccacttttttgaatcgggtatttgttattgttgtttctgaa 33130074  T
Q  102 actacccattat 113  Q
    ||||||||||||    
T  33130075 actacccattat 33130086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 54670966 - 54670897
Alignment:
Q  313 ttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaa 382  Q
    |||||||||||||  |||||||||| |||||| ||||||||||  |||||||||||||||||||||||||    
T  54670966 ttctctttcatggtgtttacttcattaaaaaccagataaaaatagtcatgttaatctcataaaacaagaa 54670897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 15480551 - 15480414
Alignment:
Q  270 ctgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgt------ 363  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||  ||||||||||||||||| ||| || |||||||||||          
T  15480551 ctgataactctttttcattccatttgaattcaaaaccaaacccttctatttaatggtgtttacttcatgaaaaaccagacaacaatgttcatgttaatgt 15480452  T
Q  364 taatctcataaaacaagaacaagatgaagttgttgatg 401  Q
    |||| || ||||||||||||||||||||||||||||||    
T  15480451 taatatcttaaaacaagaacaagatgaagttgttgatg 15480414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 15480829 - 15480749
Alignment:
Q  34 atacccataacttcaattaaaaacaaatc-cattttgttgaattgg-tattttttattgttgtttctgaaactacccatta 112  Q
    ||||||||||||||||||  ||| ||||  |||||| || |||||| ||||| ||||||||||| ||||||||||||||||    
T  15480829 atacccataacttcaattttaaaaaaattacattttttttaattgggtatttgttattgttgttactgaaactacccatta 15480749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 14735280 - 14735363
Alignment:
Q  318 tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaaga-tgaagttgttgatg 401  Q
    ||||||||| ||| |||||| |||||  |||||||||| ||||||||||||||||||||| |||| |||| | ||||||||||||    
T  14735280 tttcatggcgttt-cttcattaaaaatcagataaaaatattcatgttaatctcataaaaccagaataagattaaagttgttgatg 14735363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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