View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_32 (Length: 417)
Name: NF19913_low_32
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_32 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 33485536 - 33485155
Alignment:
| Q |
16 |
atgagagggaaaaccatatctgaaaaagttgtatccatcccttcctcatgatgttcttgttcaatcaagaactttgaatttcttctcctcccttctattg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33485536 |
atgagagggaaaaccatatctgaaaaagttgtatccatcccttcctcatgatgttcttgttcaatcaagaactttgaatttcttctcctcccttctattg |
33485437 |
T |
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| Q |
116 |
ttgtgttggcctggtttatacaacttttttcagggagtagttacatggaggaatggagtcttgcaaactgattcaagatttgaagacaatctcaagcact |
215 |
Q |
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| T |
33485436 |
ttgtgttgg-----tttatacaacttttttcagggagtagttacacagaggaatggagtcttgcaaactgattaaagatttgaagacaatctcaagcact |
33485342 |
T |
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| Q |
216 |
caacatatgaacaaaggtcgacttgaacttattcgagatcaaataataatgattgcaaagcctatcaacaaaattgttctttacaaagttcttgtcaaac |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33485341 |
caacatatgaacaaaggtcgacttaaacttattcgagatcaaataataatgattgcaaagcctatgaacaaaattgttctttacaaagttcttgtcaaac |
33485242 |
T |
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| Q |
316 |
acttca-aggtagttaactagctattgaagatgcaagttagtggcaaggaaactaaggtcgacgcttcaatcataaaaaataaaaaa |
401 |
Q |
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| T |
33485241 |
actccagaggtagttaactagctattgaagatgcaagttagtggcaaggaaactaaggtcgacgcttcaatcataaaaaataaaaaa |
33485155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 49861692 - 49861753
Alignment:
| Q |
156 |
ttacatggaggaatggagtc-ttgcaaactgattcaagatttgaagacaatctcaagcactc |
216 |
Q |
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| T |
49861692 |
ttacagggaggaatggagtcattgcaaactgattcaagatttgaagacaatctcaagcactc |
49861753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 49862177 - 49862260
Alignment:
| Q |
267 |
attgcaaagcctatcaacaaaattgttctttacaaagttcttgtcaaacacttca-aggtagttaactagctattgaagatgca |
349 |
Q |
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| T |
49862177 |
attgctaagtctatgaacaaaactgttctttacgaagctcttgtcaaacactccagagatagtcaactagctattggagatgca |
49862260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 3472 - 3561
Alignment:
| Q |
16 |
atgagagggaaaaccatatctgaaaaagttgtatccatcccttcctcatgatgttcttgttcaatcaagaactttgaatttcttctcctccctt |
109 |
Q |
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||||||| ||||| ||||| |||||||||||||| |||| |||| || |||||||||||| | || |||||||||||||||||||| |||| |
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| T |
3472 |
atgagagagaaaatcatatttgaaaaagttgtattcatctcttcttcttgatgttcttgt----tgaaaaactttgaatttcttctccttcctt |
3561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 11128 - 11217
Alignment:
| Q |
16 |
atgagagggaaaaccatatctgaaaaagttgtatccatcccttcctcatgatgttcttgttcaatcaagaactttgaatttcttctcctccctt |
109 |
Q |
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| T |
11128 |
atgagagagaaaatcatatttgaaaaagttgtattcatctcttcttcttgatgttcttgt----tgaaaaactttgaatttcttctccttcctt |
11217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 6509448 - 6509537
Alignment:
| Q |
16 |
atgagagggaaaaccatatctgaaaaagttgtatccatcccttcctcatgatgttcttgttcaatcaagaactttgaatttcttctcctccctt |
109 |
Q |
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| T |
6509448 |
atgagagagaaaatcatatttgaaaaagttgtattcatctcttcttcttgatgttcttgt----tgaaaaactttgaatttcttctccttcctt |
6509537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 8033218 - 8033163
Alignment:
| Q |
332 |
ctagctattgaagatgcaagttagtggcaaggaaactaaggtcgacgcttcaatca |
387 |
Q |
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| T |
8033218 |
ctagttattggagatgcaagttagtggcaaggaaattaagggtgatgcttcaatca |
8033163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 8046673 - 8046611
Alignment:
| Q |
305 |
tcttgtcaaacacttca-aggtagttaactagctattgaagatgcaagttagtggcaaggaaa |
366 |
Q |
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| T |
8046673 |
tcttgtcaaacactccagagatagtcagctagttattggagatgcaagttagtggcaaggaaa |
8046611 |
T |
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