View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_36 (Length: 397)
Name: NF19913_low_36
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 41039372 - 41039006
Alignment:
| Q |
12 |
aagaaaccagatagcttaaacttgaatgaatatactttgtcatctttcataaataatgatggatggcttgccaacgtaccatctattttattgtagttta |
111 |
Q |
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| T |
41039372 |
aagaaaccagatagcttaaacttgaatgaatatactttgtcatctttcataaataatgatggatggcttgccaacgtaccatctattttattgtagttta |
41039273 |
T |
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| Q |
112 |
cttttcttgtctttggttagatatttatgattcaattgtc-ttgtttatttatgaacaaatgatgaatagctaaatatccaataaaaacgtgcattgtta |
210 |
Q |
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| T |
41039272 |
cttttcttgtctttggttagatatttatgattcaattgtctttgtttatttatgaacaaatgatgaatagctaaatatccaataaaaacgtgcattgtta |
41039173 |
T |
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| Q |
211 |
ttgcacaaaatataagctaatgtcatgtaaatggggtttataaatcttgtatgtatgttatggcatacactcattcacctgcctagaggttatgattatg |
310 |
Q |
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| T |
41039172 |
ttgcacaaaatataagctaatgtcatgtaaatggggtttataaatct----agtatgttatggcatacactcattcacctgcctagaggttatgattatg |
41039077 |
T |
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| Q |
311 |
ataatgattatggataaagatgtcaaaaatgctatatattttttgtgataataactttcgattactttttt |
381 |
Q |
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| T |
41039076 |
ataatgattatggataaagatgtcaaaactgctatatattttttgtgataataactttcgattactttttt |
41039006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 18745523 - 18745566
Alignment:
| Q |
39 |
gaatatactttgtcatctttcataaataatgatggatggcttgc |
82 |
Q |
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| T |
18745523 |
gaatattctttatcatctttcataaataaagatggatggcttgc |
18745566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 54497809 - 54497759
Alignment:
| Q |
36 |
aatgaatatactttgtcatctttcataaataatgatggatggcttgccaac |
86 |
Q |
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||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
54497809 |
aatgaatattctttatcatctttcataaataagaatggatggcttaccaac |
54497759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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