View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_42 (Length: 361)
Name: NF19913_low_42
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 48964139 - 48964483
Alignment:
| Q |
1 |
tgtcatgtccggtgtatgtgattgtgtccgtgcttcataaatacacatatttttctttttaattggactgctcattcctgtcattaaatcctacaatgta |
100 |
Q |
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| T |
48964139 |
tgtcatgtccggtgtatgtgtttgtgtccgtgcttcataaatacaaatatttttctttttaattggactgttcattcctgtccttaaatcctacaatgta |
48964238 |
T |
|
| Q |
101 |
ttcaatctaatcgaagacactgctgcataaccttctacaaccattcagaatgatattgcttcttccctttccggttgcctttnnnnnnncgaacctcact |
200 |
Q |
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| T |
48964239 |
ttcaatctaatcgaagacactgctgcataaccttctacaaccattcagaatgatattgcttcttccctttccagttgcctttaaaaaaacgaacctcact |
48964338 |
T |
|
| Q |
201 |
tacttatgacttgtaatctgaatcattggcacctat-aaaaaatgttcatttttataccatcttagagaaaaatgaaccattaatgatttgtcttggcaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964339 |
tacttatgacttgtaatctgaatcattggcacctataaaaaaatgttcatttttataccatcttagagaaaaatgaaccattaatgatttgtcttggcaa |
48964438 |
T |
|
| Q |
300 |
ttttaggggttatattgttattaggcatatagggctgtacagatg |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964439 |
ttttaggggttatattgttattaggcatatagggctgtacagatg |
48964483 |
T |
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