View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_44 (Length: 356)
Name: NF19913_low_44
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 46871418 - 46871747
Alignment:
| Q |
16 |
agtaaacactatatggcgatttccaaaattccattttaaaatatgacacttttgtctaaatgttaaaccttcttgattataaaaactaatgaaaaaacat |
115 |
Q |
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| T |
46871418 |
agtaaatactatatggcgatttccaaaattccattttaaaatatgacacttttgtctaaatgttaaaccttcttgattataaaaactaatgaaaaaacat |
46871517 |
T |
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| Q |
116 |
ttttgttttcaaattttaattcgctacattgtgagattctaaaattgtttcctctagattcaatataaaatatttaattcgctatttaaatataaaatat |
215 |
Q |
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| T |
46871518 |
ttttgttttcaaattttaattcgctacattgtgagattctaaaattgtttcctctagattcaatataaaatatttaattcgctatttaaatataaaatag |
46871617 |
T |
|
| Q |
216 |
tcaagtaaagttgtgaattggtgggattcaaattcttgttgatcaaataaatcatttctcttcttctccataaccttctccttttctccatgtcgttgtg |
315 |
Q |
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| T |
46871618 |
tcaagtaaagttgtgaattggtgggattcaaattcttgttgatcaaataaatcatttctcttcttctccataaccttctccttttctccatgtcgttgtg |
46871717 |
T |
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| Q |
316 |
gttcgtcaatcatgtcattttaattttcat |
345 |
Q |
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| T |
46871718 |
gttcgtcaatcatgtcattttaattttcat |
46871747 |
T |
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