View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_47 (Length: 343)

Name: NF19913_low_47
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_47
NF19913_low_47
[»] chr6 (10 HSPs)
chr6 (20-335)||(2973753-2974068)
chr6 (20-227)||(2951682-2951889)
chr6 (20-246)||(2997509-2997735)
chr6 (20-252)||(2659106-2659341)
chr6 (20-227)||(2926900-2927107)
chr6 (20-227)||(2934339-2934546)
chr6 (20-252)||(2964228-2964472)
chr6 (20-227)||(3003906-3004119)
chr6 (20-334)||(2982612-2982923)
chr6 (250-334)||(2964485-2964569)
[»] scaffold0024 (1 HSPs)
scaffold0024 (20-320)||(35274-35565)
[»] chr3 (4 HSPs)
chr3 (21-119)||(49618136-49618234)
chr3 (126-227)||(49618259-49618361)
chr3 (126-251)||(49613279-49613404)
chr3 (250-318)||(49613418-49613486)
[»] chr7 (2 HSPs)
chr7 (20-103)||(3338921-3339004)
chr7 (126-202)||(3339015-3339091)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 2973753 - 2974068
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2973753 gttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataattgaacatttattgagatcctgttgtga 2973852  T
Q  120 aggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagt 219  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2973853 aggtgatctcttaaaaccttggttatataatgatatatcatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2973952  T
Q  220 ctttcattcagttctacaaatgctagtgttcc-ttcttttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgagttttgataat 318  Q
     ||||||| | |  | | ||  ||| || ||| |||||||||| |||||||| ||| ||| |||||| ||||||||||| |||||||| ||||||||||     
T  2973953 atttcattgactgttcctaacacta-tgatccattcttttcttaaactcactattgcttactttcaatgtttcaataaaccaaaattgggttttgataac 2974051  T
Q  319 aaagatattagtataat 335  Q
    || ||||||||||||||    
T  2974052 aatgatattagtataat 2974068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 2951682 - 2951889
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||||| || |||||||| |||    
T  2951682 gttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggacatcctgttatga 2951781  T
Q  120 aggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagt 219  Q
    ||| || ||||| |||||||||||||  | || ||||| |   |||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2951782 aggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2951881  T
Q  220 ctttcatt 227  Q
    ||||||||    
T  2951882 ctttcatt 2951889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 2997735 - 2997509
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| |   | ||     
T  2997735 gttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagataccactatgg 2997636  T
Q  120 aggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagt 219  Q
     ||   | ||||  ||| |||||| ||  ||| ||||||| || ||||| | |||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  2997635 tgggtttgtctttgaactttggttcgatgatggtataacaacaaatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagt 2997536  T
Q  220 ctttcattcagttctacaaatgctagt 246  Q
    |||||||||||||||||||||||||||    
T  2997535 ctttcattcagttctacaaatgctagt 2997509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 2659341 - 2659106
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||| ||| ||||| || || || || |||    
T  2659341 gttattccgaaaccctaccattttctgataatgaacttgttaagttaatcttaatcgattcctgttttataattcaacttttttggacatactattatga 2659242  T
Q  120 aggtga---tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttac 216  Q
     | ||    ||| || ||||||||||||||  ||| |||| ||| ||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||    
T  2659241 tgatgggtttctatttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaatttac 2659142  T
Q  217 agtctttcattcagttctacaaatgctagtgttcct 252  Q
    |  |||||||  ||||||||||||||||||||||||    
T  2659141 aaactttcatcgagttctacaaatgctagtgttcct 2659106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 2926900 - 2927107
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||||| |||||||||| ||| ||||| || ||||| ||  ||    
T  2926900 gttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcaattccgcttttataattcaacttttttggacatcctattacga 2926999  T
Q  120 aggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagt 219  Q
    |||   |||||| |||||||||||||| |||| ||||| |   |||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2927000 agggtgtctctttaaaccttggttagataatggtataagacacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2927099  T
Q  220 ctttcatt 227  Q
    ||||||||    
T  2927100 ctttcatt 2927107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 2934339 - 2934546
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||| ||||  || || |||    
T  2934339 gttattctgaaaccctaccattttctcatgatgaacttgttaagttaattttaatagattccgcttttataattcaacttttttggagagactattatga 2934438  T
Q  120 aggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagt 219  Q
    |||   |||||| ||||||| |||||| | || |||||||   |||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2934439 agggcgtctctttaaacctttgttagatactggtataacagacgatttaatgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2934538  T
Q  220 ctttcatt 227  Q
    ||||||||    
T  2934539 ctttcatt 2934546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 2964228 - 2964472
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||||| |||||||||||||||| |||||  ||||||| || |||    
T  2964228 gttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctggttttataattgaacttttttgcagatcctattatga 2964327  T
Q  120 ag----gtga--------tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaa 207  Q
     |    |||         |||||  | |||||||||| |   || ||||| |||||||||| | |||||||||||||||||||||||||| |||||||||    
T  2964328 tgttcggtgcattaatattctctctataccttggttatatgttggtataagatcagatttaatgttacttgaaaatcagcttccctatttcgttattgaa 2964427  T
Q  208 aaaatttacagtctttcattcagttctacaaatgctagtgttcct 252  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  2964428 aaaatttacagtctttcattgagttctacaaatgctagtgttcct 2964472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 3004119 - 3003906
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||||| ||||| || || |||    
T  3004119 gttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggagatactattatga 3004020  T
Q  120 ----aggtg--atctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatt 213  Q
         ||||   |||||| |||||||||||||| |||| ||||| |   |||||||  |||||||||||||||||||||| ||| |||||||||||||||    
T  3004019 tcgtcggtgcattctctttaaaccttggttagataatggtataagaaacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatt 3003920  T
Q  214 tacagtctttcatt 227  Q
    ||||||||||||||    
T  3003919 tacagtctttcatt 3003906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 2982612 - 2982923
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||||| ||||   | || ||     
T  2982612 gttattctgaacccctaccattttctcataatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggagaaaatattatgg 2982711  T
Q  120 aggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagt 219  Q
     || | ||||||  ||||||||||| ||| |  ||||  ||  ||| || | |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2982712 tggggctctctttcaaccttggttaaaaagtcttatattatatgatgtactgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagt 2982811  T
Q  220 ctttcattcagttctacaaatgctagtgttccttcttttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgagttttgataata 319  Q
    | |||||   |||| | | |    ||||||||||||||||||||||||||| |  |||| ||| ||   || |||||||||||||||  ||||||||||     
T  2982812 cgttcat---gttccatatacaaaagtgttccttcttttcttgaactcactatccattactttaaaaaattgaataaatcaaaattgtcttttgataatg 2982908  T
Q  320 aagatattagtataa 334  Q
      |||||||||||||    
T  2982909 gtgatattagtataa 2982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 2964485 - 2964569
Alignment:
Q  250 ccttcttttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgagttttgataataaagatattagtataa 334  Q
    |||||||||||| ||||||||  |||||||||| |   || ||||||||||||||||  |||||||||    |||||||||||||    
T  2964485 ccttcttttcttaaactcactactgattattttgattattacaataaatcaaaattggattttgataagggtgatattagtataa 2964569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 35565 - 35274
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaa---cttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttg 116  Q
    ||||||| ||||||||| ||||| ||||  |||||   |||||||||||||| ||||| |||||||||||||||||| ||| ||||| || ||  | ||     
T  35565 gttattcggaaaccctatcatttcctcaggatgaagaacttgttaagttaatcttaatcgattccggttttataattcaacttttttggaaatatt-tta 35467  T
Q  117 tgaaggtgatctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttac 216  Q
     ||| |  || || || |||||||||||||   || ||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  35466 agaaag--atttcctagaaccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttac 35369  T
Q  217 agtctttcattcagttctacaaatgctagtgttccttcttttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgagttttgata 316  Q
     ||||||| |  |||||||||||||          ||||||||||||||||||| || |||||||||||  ||||||| |||||||||||  ||||||||    
T  35368 ggtctttcgtggagttctacaaatg---------gttcttttcttgaactcactattaattattttcaatatttcaatcaatcaaaattggtttttgata 35278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 49618136 - 49618234
Alignment:
Q  21 ttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttttgagatcctgttgtga 119  Q
    ||||||| ||||||||| |||| ||||| ||||| ||||||||||||| ||||| |||||||| || |||||||| | ||| | |||||||| ||||||    
T  49618136 ttattccaaaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattccgggttcataattgagcttttctggagatcctattgtga 49618234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 49618259 - 49618361
Alignment:
Q  126 tctcttaaaaccttggttagaaaatgatataacatcagatttattctt-acttgaaaatcagcttccctattttgttattgaaaaaatttacagtctttc 224  Q
    |||||||||||||| |||||| | |  | ||| || ||||||||| || |||| ||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  49618259 tctcttaaaacctttgttagatagtcttgtaagattagatttattgtttacttcaaaatcagcttccctatttcgttattgaaaatatttacattctttc 49618358  T
Q  225 att 227  Q
    |||    
T  49618359 att 49618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 49613279 - 49613404
Alignment:
Q  126 tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgttattgaaaaaatttacagtctttca 225  Q
    ||||||||||||||||||||    | | |||| || |||||| || ||||||||||||||  | || | |||||||||| || ||||||||| |||||||    
T  49613279 tctcttaaaaccttggttagcttctaacataagattagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttca 49613378  T
Q  226 ttcagttctacaaatgctagtgttcc 251  Q
    || | |||||| || |||||||||||    
T  49613379 tttacttctactaacgctagtgttcc 49613404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 49613418 - 49613486
Alignment:
Q  250 ccttcttttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgagttttgataat 318  Q
    ||||||||||||||||| | |||||||||||||  |  || |||| ||||||| ||| |||||||||||    
T  49613418 ccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataat 49613486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 3338921 - 3339004
Alignment:
Q  20 gttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataattgaacattttt 103  Q
    ||||||| |||  |||| |||||||| || || |||||||||||||||| ||||| |||||||||||||||||| ||| |||||    
T  3338921 gttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatcgattccggttttataattcaactttttt 3339004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 3339015 - 3339091
Alignment:
Q  126 tctcttaaaaccttggttagaaaatgatataacatcagatttattcttacttgaaaatcagcttccctattttgtta 202  Q
    |||||| ||||||||||| | |  || |||| ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  3339015 tctctttaaaccttggttggtaggtggtatatcatcagatttattgttacttgaaaatcagcttccctttttcgtta 3339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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