View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_50 (Length: 326)
Name: NF19913_low_50
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 51863167 - 51863468
Alignment:
| Q |
1 |
catgcatactcacattcatatgtatatgttaaggcatttaacaaaccaaatatacttcattattcctgaattgcaaagtgaggttccttggtttgttatg |
100 |
Q |
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| T |
51863167 |
catgcatactcacattcatatgtatatgttaaggcatttaacaaaccaaatatacttcattatccctgaattgcaaagtgaggttccttggtttgttatg |
51863266 |
T |
|
| Q |
101 |
tatatatatagtttgcttgcattgatttagttgaatggtgtgcacacattacttattttgagccttttgtataaggaagagtaaggcctacactacttca |
200 |
Q |
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| T |
51863267 |
tatatatatagtttgcttgcattgatttagttgaatggtgtgcacacattacttattttgagccttttgtataaggaagagtaaggcctacactacttca |
51863366 |
T |
|
| Q |
201 |
ctatctggtatgtaatattttgcttattgccttgaagtttcatttcctcggtggctcggtccgtgaggtgtcagctcagggctaagaatctgacctcata |
300 |
Q |
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| T |
51863367 |
ctatctggtatgtaatattttgcttattgccttgaagtttcatttcctcggtggctcggtccgtgaggtgtcagctcagggctaagaatctgacctcata |
51863466 |
T |
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| Q |
301 |
ac |
302 |
Q |
| |
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|| |
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| T |
51863467 |
ac |
51863468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 43180574 - 43180501
Alignment:
| Q |
36 |
atttaacaaaccaaatatacttcattattcctgaattgcaaagtgaggttccttggtttgttatgtatatatat |
109 |
Q |
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|||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
43180574 |
atttaaaaaaccaaatatacttgattacccctgaattgcaaagtgaggttccttggtttgttaagtgtatatat |
43180501 |
T |
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