View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_53 (Length: 315)
Name: NF19913_low_53
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 35047050 - 35047336
Alignment:
| Q |
13 |
atgaaccacagtaagataacacaaaactacataacttaaatacctaagagaattatacttaagtttatctttatcgttaatattannnnnnncaatttga |
112 |
Q |
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| T |
35047050 |
atgaaccacagtaagataacacaaaactacataacttaaatacctaagagaattatacttaagtttatctttatcgttaatattatttttttcaatttga |
35047149 |
T |
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| Q |
113 |
tcatgattttctgattgaggcatagaaaccgaaccaagttccatttgatggattttatgtgagagagatgtactactaacacaactactacattcatttt |
212 |
Q |
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| T |
35047150 |
tcatgattttctgattgaggcatagaaaccgaaccaagttccatttgatggattttatgtgagagagatgtactactaacacaactactacattcatttt |
35047249 |
T |
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| Q |
213 |
tgacacaatctttttgggtgaaattgaacctatcaagaaaaagttgaagcatggaagtaaaaacttcaccaccaactaacataagaa |
299 |
Q |
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| T |
35047250 |
tgacacaatctttttgggtgaaattgaacctatcaagaaaaagttgaagcatggaagtaaaaacttcaccaccaactaacataagaa |
35047336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 35000903 - 35000971
Alignment:
| Q |
231 |
tgaaattgaacctatcaagaaaaagttgaagcatggaagtaaaaacttcaccaccaactaacataagaa |
299 |
Q |
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| T |
35000903 |
tgaaattgaacatattaagaaaaagttgaagcatggaagtaaaaacttcaccacctactaacataagaa |
35000971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 35000716 - 35000768
Alignment:
| Q |
34 |
caaaactacataacttaaatacctaagagaattatacttaagtttatctttat |
86 |
Q |
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| T |
35000716 |
caaaactatataacatagatacctaagagaattatacttaattttgtctttat |
35000768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 15559978 - 15560022
Alignment:
| Q |
253 |
aagttgaagcatggaagtaaaaacttcaccaccaactaacataag |
297 |
Q |
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| T |
15559978 |
aagttgaagcatggaagtaaaaacttcaccacctacaaacataag |
15560022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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