View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_56 (Length: 306)
Name: NF19913_low_56
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_56 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 25278 - 24985
Alignment:
| Q |
1 |
ttgcaagatttaatggacccaactctaagtgatacttacaacgttaaccaattcattaggtgttcacaaattggactcttatgcgtacaagacgaaccag |
100 |
Q |
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| T |
25278 |
ttgcaagatttaatggacccaactctaagtgatacttacaacgttaaccaatttattaggtgttcacaaattggactcttatgcgtacaagacgaaccag |
25179 |
T |
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| Q |
101 |
atgatcgtccacacatgtcaaatgtggtgaccatgctcgacaatgaaactacaaccctcttaacacctaaacaaccaaccttttttacacgtaataaaga |
200 |
Q |
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| T |
25178 |
atgatcgtccacacatgtcaaatgtggtgaccatgctcgacaatgaaactacaaccctcttaacacctaaacaaccaaccttttttacacgtaataaaga |
25079 |
T |
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| Q |
201 |
cctctcaagcacagcttcttcaagtttgcagcttgatagtatcattgaagaaggacgataagagatagaacattgctccaattggacacttttg |
294 |
Q |
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| T |
25078 |
cctctcaagcacagcttcttcaagtttgcagcttgatagtatcattgaagaaggacgatgagagataaaacattgctccaattggacacttttg |
24985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 21917431 - 21917146
Alignment:
| Q |
6 |
agatttaatggacccaactctaagtgatacttacaacgttaaccaatt----cattaggtgttcacaaattggactcttatgcgtacaagacgaaccaga |
101 |
Q |
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| T |
21917431 |
agatttaatggacccgtctctatgtgatacttacaacgccaaccaatttatatattaggtgttcccaaattggactcttatgcgtacaggatgaaccgga |
21917332 |
T |
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| Q |
102 |
tgatcgtccacacatgtcaaatgtggtgaccatgctcgacaatgaaactacaaccctcttaacacctaaacaaccaaccttttttacacgtaataaagac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||| |
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| T |
21917331 |
tgatcgtccacacatgtcaaatgtggtgaccatgctagagagtgaaactacaaccctcataacccctaaacaaccaacctttttttcacg---taaagac |
21917235 |
T |
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| Q |
202 |
ctctcaagcacagcttcttcaagtttgcagcttgatagtatcattgaagaaggacgataagagatagaacattgctccaattggacact |
290 |
Q |
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|| || || ||||||||||||||| ||||| |||| |||| |||||||||| | ||||||||||| ||||| ||||||||| ||||| |
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| T |
21917234 |
ctatctagtacagcttcttcaagtctgcagattgaaagtagcattgaagaatgcagataagagataaaacatgactccaattgaacact |
21917146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 37713302 - 37713267
Alignment:
| Q |
65 |
cacaaattggactcttatgcgtacaagacgaaccag |
100 |
Q |
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| T |
37713302 |
cacaaattggactcttatgcgtacaagatgaaccag |
37713267 |
T |
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